Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005172 [exp] 281 / 2e-94 ND / Lus10015851 [exp] 125 / 9e-36 ND / Lus10033137 [exp] 124 / 3e-34 ND / Lus10001193 [exp] 122 / 3e-33 ND / Lus10035488 [exp] 122 / 5e-33 ND / Lus10025417 [exp] 119 / 1e-32 ND / Lus10000977 [exp] 95 / 9e-22 ND / Lus10010051 [exp] 81 / 7e-17 ND / Lus10014481 [exp] 72 / 1e-15 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G059400 [exp] 52 / 1e-07 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10038131 pacid=23163674 polypeptide=Lus10038131 locus=Lus10038131.g ID=Lus10038131.BGIv1.0 annot-version=v1.0 ATGTTTTTCTTGCGGATAATTTCAACACCTCATCGAAACGAGTGGTTACCGTATAAGATTCAGTGGGCCCATTGCAACACCAACGAGGTTTTCTATATTG GGTATACGAGTACGAATAGGGTGGAGTCCCAACACTCGTCTCTCAAAATATGGTACAACTCTTCCAATCAAAGACTTTATACACTATTTGAGGGATATCA TGCATCAATTGTGGGCCAAGTCATAGAAGTGCAACGAGCTATAGATGAATCACGAGCAAGCGCATCCAGCAGTTGTGGAACTAAGCAGGAAGGCTTGAGA CTTGTTCTCATAGTAAAACTTGCCATCACCACCACCATTCTCACCTTCCGAAGCATCGGCGGAGAAAATCATAACCCCATTCACACAAAACCCATTCTCC ACCAGCAAACTCAACGAATCAAAGAAGCCATCCCCTTGGATCCCTCTCCCATTCACCTCATAACTTGGCAACACCTTCTCTTTACCAAACTCCTCAAGTC TCACACTAAACGCCTTCACGTACGCCGCCGGGTGCCGGACCTTATCCGTGTAAAACTGGTAGTTGACTTAGTCAACGAAACCCCCATACTTGCGAAACAA CGCCACGTAAGGAGCCACCGTGGAGTGGAAAGGCGCGATGGTGGCTACGGAGATCAATTGGGCCTTCTTCAATTGGGAAATGAGCTCCCCGATGCAGAAG GCGAAGCTGTACTAGTCGGTGCTCCGGCGGCCGAAGGTCTCGTAGTCGACGTCGATGCCGTCAAGGTGGTAGGTGGAGATGAGGGAAGTCAGGGAGGAAA CGGCGTTGGAGATCCAGAGGGAGCGGGACTTGGAGGGTATCCAGCGGAGAACTTTGCCGCCGAGGGCGCTCCAGCCGCCAAGGCTGAGCATGACTTCGAG GTTGTCGGGATTTGA
AA sequence Show only first row Show all	>Lus10038131 pacid=23163674 polypeptide=Lus10038131 locus=Lus10038131.g ID=Lus10038131.BGIv1.0 annot-version=v1.0 MFFLRIISTPHRNEWLPYKIQWAHCNTNEVFYIGYTSTNRVESQHSSLKIWYNSSNQRLYTLFEGYHASIVGQVIEVQRAIDESRASASSSCGTKQEGLR LVLIVKLAITTTILTFRSIGGENHNPIHTKPILHQQTQRIKEAIPLDPSPIHLITWQHLLFTKLLKSHTKRLHVRRRVPDLIRVKLVVDLVNETPILAKQ RHVRSHRGVERRDGGYGDQLGLLQLGNELPDAEGEAVLVGAPAAEGLVVDVDAVKVVGGDEGSQGGNGVGDPEGAGLGGYPAENFAAEGAPAAKAEHDFE VVGI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10038131 [exp]	0	1
AT4G17030		ATHEXPBETA3.1, ...	expansin-like B1 (.1)		Lus10011012 [exp]	2.4	0.8086
AT4G27250			NAD(P)-binding Rossmann-fold s...		Lus10021294 [exp]	4.2	0.7618
AT1G15360	AP2_ERF	WIN1, SHN1	WAX INDUCER 1, SHINE 1, Integr...		Lus10003506 [exp]	5.9	0.7603
AT2G28930		APK1B	protein kinase 1B (.1.2.3)		Lus10040806 [exp]	8.0	0.8098
AT4G00330		CRCK2	calmodulin-binding receptor-li...		Lus10017787 [exp]	12.8	0.7727
AT3G47390		PHS1	PHOTOSENSITIVE 1, cytidine/deo...		Lus10041104 [exp]	13.2	0.7150
AT1G18010			Major facilitator superfamily ...		Lus10019528 [exp]	13.4	0.7546
AT5G54590		CRLK1	calcium/calmodulin-regulated r...		Lus10043083 [exp]	13.7	0.7677
AT1G28250			unknown protein		Lus10015429 [exp]	17.2	0.7453
AT5G65520			Tetratricopeptide repeat (TPR)...		Lus10016283 [exp]	31.3	0.7081

Compare expression of checked genes

Lus10038131 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.