Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49810 192 / 7e-54 MMT methionine S-methyltransferase (.1) AT4G24270 94 / 1e-20 EMB140 EMBRYO DEFECTIVE 140 (.1.2) AT1G71800 44 / 0.0002 CSTF64 cleavage stimulating factor 64 (.1) AT1G74230 43 / 0.0002 GR-RBP5 glycine-rich RNA-binding protein 5 (.1) AT4G39260 40 / 0.0002 ATGRP8, CCR1, GR-RBP8 glycine-rich RNA-binding protein 8, GLYCINE-RICH PROTEIN 8, cold, circadian rhythm, and RNA binding 1 (.1.2.3.4) AT2G16940 42 / 0.0005 Splicing factor, CC1-like (.1.2.3) AT1G22330 42 / 0.0006 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026263 [exp] 261 / 2e-78 AT5G49810 1551 / 0.0 methionine S-methyltransferase (.1) Lus10042407 [exp] 256 / 1e-76 AT5G49810 1554 / 0.0 methionine S-methyltransferase (.1) Lus10016122 [exp] 65 / 4e-12 AT4G24270 45 / 1e-05 EMBRYO DEFECTIVE 140 (.1.2) Lus10015146 [exp] 42 / 0.0001 AT3G08000 145 / 5e-46 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10031534 [exp] 42 / 0.0002 AT3G08000 146 / 2e-46 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10043158 [exp] 42 / 0.0003 AT4G13850 154 / 1e-48 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Lus10030327 [exp] 43 / 0.0004 AT3G55340 275 / 9e-85 phragmoplastin interacting protein 1 (.1) Lus10032591 [exp] 40 / 0.0005 AT4G13850 157 / 5e-50 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Lus10026344 [exp] 40 / 0.0006 AT2G21660 140 / 3e-44 GLYCINE-RICH RNA-BINDING PROTEIN 7, "cold, circadian rhythm, and rna binding 2", GLYCINE RICH PROTEIN 7, cold, circadian rhythm, and rna binding 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G229800 [exp] 216 / 2e-62 AT5G49810 1553 / 0.0 methionine S-methyltransferase (.1) Potri.004G229732 [exp] 111 / 2e-26 AT4G24270 860 / 0.0 EMBRYO DEFECTIVE 140 (.1.2) Potri.002G098100 [exp] 45 / 6e-05 AT1G78260 164 / 5e-49 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.009G163400 [exp] 43 / 0.0004 AT3G52660 400 / 9e-136 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.002G222400 [exp] 42 / 0.0004 AT3G07810 439 / 8e-151 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) CL0061 [flax] [poplar] PLP_aminotran PF00155 [flax] [poplar] Aminotran_1_2 Aminotransferase class I and II
Representative CDS sequence Show only first row Show all	>Lus10038132 pacid=23163804 polypeptide=Lus10038132 locus=Lus10038132.g ID=Lus10038132.BGIv1.0 annot-version=v1.0 ATGGGGCTCACCGGTGATCAGCCAATCTGTGCACGAACAGCATGGGCATATGGAAAAACTGGTGGGTGCATTACTCATGTTTTGTCAGTTTACAGCTGTC AATTGCGTCAACCGCAGCAGGTTAAGAAAATCTTCAAGTTTCTTCGGAATGGTTTCCATGACGTGGGCAGTTCTTTGGACTTGTCTTTTGGTGATGAAGC TGTTGCAGATGAGAAAATACCATTCCTAGCGTATCTTGCTGGGGAACTAAAGGAGAATTCAAGTTTTCCGTACGAGCCACCAGCTGGAAGCTTGCAGTTT CGAAATCTCATTGCTGGATTTATGAGAACATACCATCATATTCCATTGAACTCTAGTGACTCAGGGACTGTGAGGAAGCCATGGGTTTACATTTGTGGTC CAACATCGAATCCAACAGGATTGCTCTTTAGCAATAAAGAGATGGAGAGGATGTTAACCAGTTGTGCCAAATTTGGAGCCCGGGATATCATTGATACTTC ATTCTCAGGATTGGAATATGATGAAGATTGGGATGGATGGAATTTGGAGGCCTCTTTATCAAACCTTACGTCCTCTAACCCTTCATTTTGTGTCTCCCTT CTTGGAGGAATGTCTCTGAAGATGTTTACAGGTGCACTAAGATTCGGGTTTCTGATTTCGAATCATCCGGATTTTATTGATGCGTTTTATAGCTTTCCCG GGCTAAGTAAACCCCATGCCACAATGAGATATGCTGTCAAGAAATTGCTGGGACTGAAAGAGCAAAATCTTGGGGTGCTGACAAATGCAGTTTCTGAAAA TACCAAAACCCTGAAATGTAGAGCCCAGCGCTTGAAGGAGGCCAATTCAGAAGATATACGTAAATTTTGTGCTGATGTCGGTGTTGTTGTTTCCATTCCG ATACTGCATGACAAGTTTACGGGAAAGTCGAGGGGGCTAGCGTACGTGGACTTCTCCGACGATGAGCATCTTGCTGCTGCCGTAGCGAAGAACAAGCAGA CGTTGCTTGGTAAAAGGTTGAGCATCGCACGGTCTAATCCTAAGAAGGGGAAGAAAGGAGGTCAAGATGGTGGAAGAGGTTCTAATCCTTGTCTCTGTGT GTGGTCCTCTTCGGATTTGGATATTCTGTTGGGCAACAATGGCTAA
AA sequence Show only first row Show all	>Lus10038132 pacid=23163804 polypeptide=Lus10038132 locus=Lus10038132.g ID=Lus10038132.BGIv1.0 annot-version=v1.0 MGLTGDQPICARTAWAYGKTGGCITHVLSVYSCQLRQPQQVKKIFKFLRNGFHDVGSSLDLSFGDEAVADEKIPFLAYLAGELKENSSFPYEPPAGSLQF RNLIAGFMRTYHHIPLNSSDSGTVRKPWVYICGPTSNPTGLLFSNKEMERMLTSCAKFGARDIIDTSFSGLEYDEDWDGWNLEASLSNLTSSNPSFCVSL LGGMSLKMFTGALRFGFLISNHPDFIDAFYSFPGLSKPHATMRYAVKKLLGLKEQNLGVLTNAVSENTKTLKCRAQRLKEANSEDIRKFCADVGVVVSIP ILHDKFTGKSRGLAYVDFSDDEHLAAAVAKNKQTLLGKRLSIARSNPKKGKKGGQDGGRGSNPCLCVWSSSDLDILLGNNG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G49810		MMT	methionine S-methyltransferase...		Lus10038132 [exp]	0	1
AT1G59950			NAD(P)-linked oxidoreductase s...		Lus10039266 [exp]	2.4	0.8869
AT1G27340			Galactose oxidase/kelch repeat...		Lus10003117 [exp]	7.2	0.8092
AT3G15200			Tetratricopeptide repeat (TPR)...		Lus10031269 [exp]	7.9	0.7942
					Lus10000538 [exp]	8.2	0.8080
AT4G26120			Ankyrin repeat family protein ...		Lus10024843 [exp]	10.1	0.7618
					Lus10024086 [exp]	12.2	0.7710
AT3G52420		ATOEP7	outer envelope membrane protei...		Lus10003733 [exp]	12.6	0.8090
AT2G38570			unknown protein		Lus10022733 [exp]	14.5	0.8057
AT1G11270			F-box and associated interacti...		Lus10025893 [exp]	24.1	0.7819
AT1G19670		CORI1, ATHCOR1,...	CORONATINE-INDUCED PROTEIN 1, ...		Lus10014702 [exp]	25.6	0.7944

Compare expression of checked genes

Lus10038132 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.