Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G25870 597 / 0 haloacid dehalogenase-like hydrolase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005169 [exp] 705 / 0 AT2G25870 614 / 0.0 haloacid dehalogenase-like hydrolase family protein (.1) Lus10005489 [exp] 666 / 0 AT2G25870 689 / 0.0 haloacid dehalogenase-like hydrolase family protein (.1) Lus10006031 [exp] 655 / 0 AT2G25870 701 / 0.0 haloacid dehalogenase-like hydrolase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G057500 [exp] 640 / 0 AT2G25870 701 / 0.0 haloacid dehalogenase-like hydrolase family protein (.1) Potri.006G235301 [exp] 146 / 6e-41 AT2G25870 0 / 1 haloacid dehalogenase-like hydrolase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0126 [flax] [poplar] Peptidase_MA PF02130 [flax] [poplar] UPF0054 Uncharacterized protein family UPF0054 CL0137 [flax] [poplar] HAD PF08282 [flax] [poplar] Hydrolase_3 haloacid dehalogenase-like hydrolase
Representative CDS sequence Show only first row Show all	>Lus10038133 pacid=23163861 polypeptide=Lus10038133 locus=Lus10038133.g ID=Lus10038133.BGIv1.0 annot-version=v1.0 ATGGAACGGAGTATCGCCGAATCGCTTCGCCTTAACGTTCCGAAGGCACTGAAGTTGGCACTGGATGGCCTGAAAGGCTCCTCCTACGAAACTCGAGATA CTGCTATCACTTGTGTTGATACTTATGACAACATCGAGTTGTCTGTGATGCTTTGCAATGACAGCTTCATTCGTGAGCTTAACAAAGAATGGAGGGGTGA AGACCGTGCTACTGATGTCCTCTCAATGTCACAACATTCACCCGAACTTAAAATCCCTGTTCTTATGCTGGGTGACATTGTAGTTTCCGTGGAGACAGCT GCAAGGCAAGCTAAAGAGAGAGGTCATTCACTTCTTGATGAAATTCGCATTCTCCTGGTTCATGGCTTGTTACATCTTTTAGGATTTGATCATGAGATTA GCGAAGAAGCTGAAACTGAAATGGAGAAAGAGGAGGATGTTCTTCTAAAGACTCTTGGGTGGAAGGGTAAAGGGCTAATTCAAAGTGCGCAGGATGGTGA TTGTAAAGCTAATTCTGTTTCAGAAACCTTGGATGACAGAAAGAAAGAAGGCAGTCTTCGGTTCTACAAACCAAAGTTCAAGTATATCTTCTGTGACATG GATGGAACATTGCTTAACAGCAAAAGTCAACTTTCGACAACAAATGCAAATGCATTGACAGAAGCTATGTCAAGAGGAGTAAAGATAGTGATAGCCACTG GAAAGGCTCGACCTGCTGCGATAAATATCTTAAAGACTGCAGGCTTAGCGGATAAAGATGGTCTTGTTTCAGAGTTCTCTCCTGGTGTTTTCTTGCAGGG TTTGCTTATCTATGGTAAGGAGGGACGAGAGATTTTTAGAAGAAATTTAGATCCAAATGTCTGCAGAGAGGTTTGTCAGTATTCTTTGGAGCATAAGGTT CCTCTTATGGCATTCAGCAATGATCGTTGCTTCACGCTGTTTGACCACCCCCTTGTTGACTCGCTGCATAGAATTTACCAAGAGCCACAGGCAGAAGTCA TATCTTCAGTTGAGCAACTTCTGGCTGCAGCTGACATACAGAAAATGTTATTTATAGACAGTGCTGAGAGAGTAGCCAATGAACTGAGGCCGTACTGGTC AGAAGCAACTGGAGGGCGTGCTAGTGTTGTCCAAGCTATATCACATATGCTTGAGATTGTGCCTGTTGGAACATCGAAAGGAAGCGGGGTACAAATCCTC CTTGATCATTTGGGTGCCACAGCGGAGGAGATAATGGCGATTGGAGACGGAGAAAATGATATTGAGATGCTGGAATTAGCAGCTCTAGGAGTGGCTCTGA GAAATGGTTCAAAGAAGACGAAAGCTGCGGCGAACATAATTGGCGCGAGTAATGATGAAGATGGGGTAGCTGATGCTATATATCGATATGCATTTTGA
AA sequence Show only first row Show all	>Lus10038133 pacid=23163861 polypeptide=Lus10038133 locus=Lus10038133.g ID=Lus10038133.BGIv1.0 annot-version=v1.0 MERSIAESLRLNVPKALKLALDGLKGSSYETRDTAITCVDTYDNIELSVMLCNDSFIRELNKEWRGEDRATDVLSMSQHSPELKIPVLMLGDIVVSVETA ARQAKERGHSLLDEIRILLVHGLLHLLGFDHEISEEAETEMEKEEDVLLKTLGWKGKGLIQSAQDGDCKANSVSETLDDRKKEGSLRFYKPKFKYIFCDM DGTLLNSKSQLSTTNANALTEAMSRGVKIVIATGKARPAAINILKTAGLADKDGLVSEFSPGVFLQGLLIYGKEGREIFRRNLDPNVCREVCQYSLEHKV PLMAFSNDRCFTLFDHPLVDSLHRIYQEPQAEVISSVEQLLAAADIQKMLFIDSAERVANELRPYWSEATGGRASVVQAISHMLEIVPVGTSKGSGVQIL LDHLGATAEEIMAIGDGENDIEMLELAALGVALRNGSKKTKAAANIIGASNDEDGVADAIYRYAF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G25870			haloacid dehalogenase-like hyd...		Lus10038133 [exp]	0	1
AT1G36320			unknown protein		Lus10033109 [exp]	1.0	0.8795
AT1G73090			unknown protein		Lus10037331 [exp]	2.0	0.8637
AT1G78910			Pseudouridine synthase family ...		Lus10034804 [exp]	2.4	0.8787
AT3G10540			3-phosphoinositide-dependent p...		Lus10028834 [exp]	3.5	0.8546
AT5G58870		FTSH9	FTSH protease 9 (.1)		Lus10040695 [exp]	3.9	0.8665
AT2G48120		PAC	pale cress protein (PAC) (.1),...		Lus10000662 [exp]	4.5	0.8567
AT3G47390		PHS1	PHOTOSENSITIVE 1, cytidine/deo...		Lus10020208 [exp]	5.5	0.8477
AT5G39940			FAD/NAD(P)-binding oxidoreduct...		Lus10015345 [exp]	5.7	0.8324
AT1G78010			tRNA modification GTPase, puta...		Lus10029578 [exp]	6.0	0.8486
AT5G55700		BAM4, BMY6	BETA-AMYLASE 6, beta-amylase 4...		Lus10022516 [exp]	7.5	0.8300

Compare expression of checked genes

Lus10038133 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.