Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G18350 139 / 4e-39 ZF_HD ATHB24, ZHD6 ZINC FINGER HOMEODOMAIN 6, homeobox protein 24 (.1) AT1G69600 120 / 5e-32 ZF_HD ATHB29, ZFHD1, ZHD11 ZINC FINGER HOMEODOMAIN 11, ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 29, zinc finger homeodomain 1 (.1) AT5G60480 112 / 2e-29 ZF_HD ATHB26, ZHD12 ZINC FINGER HOMEODOMAIN 12, homeobox protein 26 (.1) AT1G14440 112 / 1e-28 ZF_HD ATHB31, ZHD4 ZINC FINGER HOMEODOMAIN 4, homeobox protein 31 (.1.2) AT2G02540 112 / 2e-28 ZF_HD ATHB21, ZFHD4, ZHD3 ZINC FINGER HOMEODOMAIN 3, ZINC FINGER HOMEODOMAIN 4, homeobox protein 21 (.1) AT1G75240 103 / 3e-25 ZF_HD ATHB33, ZHD5 zinc-finger homeodomain 5, homeobox protein 33 (.1) AT4G24660 96 / 4e-23 ZF_HD ATHB22, MEE68, ZHD2 ZINC FINGER HOMEODOMAIN 2, MATERNAL EFFECT EMBRYO ARREST 68, homeobox protein 22 (.1) AT5G65410 91 / 8e-21 ZF_HD ATHB25, ZFHD2, ZHD1 ZINC FINGER HOMEODOMAIN 1, ZINC FINGER HOMEODOMAIN 2, ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 25, homeobox protein 25 (.1) AT3G28917 84 / 5e-20 ZF_HD MIF2 mini zinc finger 2 (.1) AT1G74660 84 / 6e-20 ZF_HD MIF1 mini zinc finger 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010694 [exp] 271 / 2e-89 AT2G02540 215 / 5e-68 ZINC FINGER HOMEODOMAIN 3, ZINC FINGER HOMEODOMAIN 4, homeobox protein 21 (.1) Lus10010693 [exp] 164 / 2e-50 AT2G02540 104 / 7e-28 ZINC FINGER HOMEODOMAIN 3, ZINC FINGER HOMEODOMAIN 4, homeobox protein 21 (.1) Lus10026010 [exp] 130 / 2e-35 AT1G75240 172 / 2e-52 zinc-finger homeodomain 5, homeobox protein 33 (.1) Lus10014302 [exp] 127 / 3e-34 AT1G75240 176 / 9e-54 zinc-finger homeodomain 5, homeobox protein 33 (.1) Lus10007147 [exp] 100 / 5e-24 AT2G18350 222 / 1e-70 ZINC FINGER HOMEODOMAIN 6, homeobox protein 24 (.1) Lus10015900 [exp] 79 / 4e-17 AT4G24660 145 / 6e-44 ZINC FINGER HOMEODOMAIN 2, MATERNAL EFFECT EMBRYO ARREST 68, homeobox protein 22 (.1) Lus10036753 [exp] 79 / 7e-17 AT5G15210 112 / 3e-30 ZINC FINGER HOMEODOMAIN 8, ZINC FINGER HOMEODOMAIN 3, homeobox protein 30 (.1) Lus10030679 [exp] 76 / 2e-15 AT5G15210 145 / 2e-42 ZINC FINGER HOMEODOMAIN 8, ZINC FINGER HOMEODOMAIN 3, homeobox protein 30 (.1) Lus10005244 [exp] 75 / 2e-15 AT5G39760 142 / 1e-41 ZINC FINGER HOMEODOMAIN 10, homeobox protein 23 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G229600 [exp] 190 / 2e-58 AT1G14440 244 / 1e-79 ZINC FINGER HOMEODOMAIN 4, homeobox protein 31 (.1.2) Potri.003G000400 [exp] 177 / 1e-53 AT1G14440 238 / 9e-78 ZINC FINGER HOMEODOMAIN 4, homeobox protein 31 (.1.2) Potri.004G135100 [exp] 107 / 7e-27 AT2G02540 213 / 4e-68 ZINC FINGER HOMEODOMAIN 3, ZINC FINGER HOMEODOMAIN 4, homeobox protein 21 (.1) Potri.005G158800 [exp] 97 / 4e-23 AT4G24660 204 / 1e-65 ZINC FINGER HOMEODOMAIN 2, MATERNAL EFFECT EMBRYO ARREST 68, homeobox protein 22 (.1) Potri.007G024100 [exp] 97 / 7e-23 AT1G75240 186 / 2e-56 zinc-finger homeodomain 5, homeobox protein 33 (.1) Potri.002G035200 [exp] 95 / 2e-22 AT1G14440 169 / 2e-50 ZINC FINGER HOMEODOMAIN 4, homeobox protein 31 (.1.2) Potri.002G102900 [exp] 94 / 3e-22 AT4G24660 209 / 9e-68 ZINC FINGER HOMEODOMAIN 2, MATERNAL EFFECT EMBRYO ARREST 68, homeobox protein 22 (.1) Potri.019G081300 [exp] 94 / 4e-22 AT4G24660 166 / 8e-51 ZINC FINGER HOMEODOMAIN 2, MATERNAL EFFECT EMBRYO ARREST 68, homeobox protein 22 (.1) Potri.004G126600 [exp] 91 / 4e-22 AT3G28917 129 / 5e-40 mini zinc finger 2 (.1) Potri.005G122500 [exp] 95 / 5e-22 AT2G18350 179 / 2e-54 ZINC FINGER HOMEODOMAIN 6, homeobox protein 24 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04770 [flax] [poplar] ZF-HD_dimer ZF-HD protein dimerisation region
Representative CDS sequence Show only first row Show all	>Lus10038135 pacid=23163745 polypeptide=Lus10038135 locus=Lus10038135.g ID=Lus10038135.BGIv1.0 annot-version=v1.0 ATGGAATTAACGAGTCATCATCATCATCATCATCATCATGTTCATGAGGAAGAGGAGGATCACATGCCCATTCCAGTAAACGCTTCCGGAGGCCTAAACC ACTTGATCCACCACCACCACAATCCCCCTCTTTCTCCTTCTACTGTTACTGTTACACCGCCAACTTGTTCTTCTGCACCATTATCTGTATCTCTCCCCAA TAATAATAATAATAATAATGGATCTGGAGGGAGCCTAGTAGTAGTTGTAGATCGTCATCAGCACCATAACAACAACAACAAAAACAACAGCAAGAGAAGG TCTTCGGTGATCAGATACAGGGAATGCCTGAAGAACCACGCGGCAGCAATGGGAGGGAACGCTACTGACGGATGCGGAGAGTTCATGCCCAGCGGAGAAG AAGGCACCATCGAAGCACTCACTTGCTCCGCCTGCAACTGCCACCGCAACTTCCACCGCAAACAAACCGTCCTCCACCACCCTCCTCATCCTAACCATCA CCACAAGCCCCTCCAGCTCCTACAACCACCACATCATCAAGTTCCACCGCCGTTGGTGGTCCCCCACCACCACCACCACATGCTCATGTCTTACAATATG GCTGCCGCCGCCGCTGCTGGATCACTGCTGCCATCTGAATCCGACAACCACAACAACGATGCTTTTAATAAAGAAGATCATCATCATCATCATGAGTACC ATAACAACAAGCAGCAGCAAGGGACGAATAAGAAGAGGCACAGGACAAAGTTCAGCCAGGAGCAGAAGGAGAAGATGCTTGCTTTTGCTGAGAGCGTTGG CTGGAAGCTTCAGAAGCAAGAGGAGAGCGTGGTCCAGCAGTTCTGCCAGGAGATTGGTGTTAAGCGTCGTGTGCTCAAGGTCTGGATGCACAATAACAAG CACACTTACCAACATCATCATCATCAAAACGCTGTCGTATCTCGTCCTCCAGTGCTTCATCCATCCACCACCACCACTGCTCCACTCCCGGCTTCTTCTT AA
AA sequence Show only first row Show all	>Lus10038135 pacid=23163745 polypeptide=Lus10038135 locus=Lus10038135.g ID=Lus10038135.BGIv1.0 annot-version=v1.0 MELTSHHHHHHHHVHEEEEDHMPIPVNASGGLNHLIHHHHNPPLSPSTVTVTPPTCSSAPLSVSLPNNNNNNNGSGGSLVVVVDRHQHHNNNNKNNSKRR SSVIRYRECLKNHAAAMGGNATDGCGEFMPSGEEGTIEALTCSACNCHRNFHRKQTVLHHPPHPNHHHKPLQLLQPPHHQVPPPLVVPHHHHHMLMSYNM AAAAAAGSLLPSESDNHNNDAFNKEDHHHHHEYHNNKQQQGTNKKRHRTKFSQEQKEKMLAFAESVGWKLQKQEESVVQQFCQEIGVKRRVLKVWMHNNK HTYQHHHHQNAVVSRPPVLHPSTTTTAPLPASS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G02540	ZF_HD	ATHB21, ZFHD4, ...	ZINC FINGER HOMEODOMAIN 3, ZIN...		Lus10038135 [exp]	0	1
AT1G68480	C2H2ZnF	JAG	JAGGED, C2H2 and C2HC zinc fin...		Lus10041443 [exp]	1.0	0.9945
AT2G35640	Trihelix		Homeodomain-like superfamily p...		Lus10018283 [exp]	1.4	0.9880
AT2G35640	Trihelix		Homeodomain-like superfamily p...		Lus10040628 [exp]	1.7	0.9875
AT3G02645			Plant protein of unknown funct...		Lus10031159 [exp]	2.6	0.9860
AT3G13960	GRF	ATGRF5	growth-regulating factor 5 (.1...		Lus10033441 [exp]	3.2	0.9864
AT1G15910		FDM1	factor of DNA methylation 1, X...		Lus10026076 [exp]	3.5	0.9764
AT2G27880		AGO5	ARGONAUTE 5, Argonaute family ...		Lus10014386 [exp]	3.5	0.9866
AT3G55930			Pre-mRNA-splicing factor 3 (.1...		Lus10031931 [exp]	3.7	0.9749
AT5G48090		ELP1	EDM2-like protein1 (.1.2)		Lus10002268 [exp]	4.0	0.9845
AT5G11320		YUC4	YUCCA4, Flavin-binding monooxy...		Lus10008092 [exp]	4.7	0.9796

Compare expression of checked genes

Lus10038135 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.