Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G23390 613 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010689 [exp] 862 / 0 AT2G23390 669 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G228500 [exp] 675 / 0 AT2G23390 669 / 0.0 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0257 [flax] [poplar] Acetyltrans PF04339 [flax] [poplar] FemAB_like Peptidogalycan biosysnthesis/recognition
Representative CDS sequence Show only first row Show all	>Lus10038137 pacid=23163931 polypeptide=Lus10038137 locus=Lus10038137.g ID=Lus10038137.BGIv1.0 annot-version=v1.0 ATGGCAGCAGTGAGCAACTGCTGCTGCAAGCCGTCGCCATTCCTCAGCCAATTCCCATCTCGGCTTTCATGTTTTGGGATTGTGTTATTTAAATCGACAT CGGATTGTTACCTTGGAATTTCGATCGGGATATGTTCGTCCTACGGATACGCTAAGAATACCCGGAACAGAAATGCATCTACAATCACTGCAATATTTTG GGGACCAAAGAAGTCTGTGGAACCAAAGGAACTAGACCTTTCATTGGGTGATTTCATACTAAGAGAGTCATCCCCAGAGGGAGCCCCTGAATCCCAAGCT TTATCCAAAAGGGTTTCACTTTCAATTATTTCTTCAATCTCTGAGGTTCCAGCAGATGCTTGGGATGCATGCCATCTGGACACTACAGGCCTTGAGAAAT ATAATCCGTTCCTGTCCCATTGTTTCCTTTCATGCTTGGAAGAGACTGGCTGTGCTGTCAAGGAGACAGGATGGGCTCCTAGCCACATTGTTGCTAAGGA TGCTGATGGCACTGTTCTAGGTGTTGTTCCACTTTATCTGAAAAGCCACTCTTATGGGGAATTTGTGTTTGATCATTCCTGGGCTGATGCCTATTATAAT TTTGGGGCAAGATATTATCCGAAGTTCCAGTCTTGTGTACCTTTCACTCCCGTAACTGGTCCAAGGATTCTAATTCGTAATACCCCGCTAAGAGATCAAG TCTTTGATGTTATCGTTTCCACTCTCAAGGAACTGACAACTAAGTCCGAGCTCTCTTCATTACACATTACCTTCCCCACAGAGAAAGAGTGGGATAGATT GAGAGGAAGTGGATTCCTTCAGAGGATTGGAATGCAGTATCACTGGAAAAATCGTAATTATAAGAATTTTGATGAATTCTTGATGGATTTGAAACAAAAG AAACGGAAGAGCATCCGCCAAGAGCGTAAAAAGGTTTCGGCACAAAACCTTACCATGAAACGGCTCCGAGGTTATGAGATAAAGGGAAACCATTGGGATT CCTTCTACACATTCTACAGAAACACAACTGACAACAAGTGGGGTACTCCATACCTCACGAGAGATTTCTTCCACGCCATGGGATCGAAGATGGGAGATCA AGTGCTGCTTGTTGTTGCTGAAGAAGGGGACGAAGTTGTTGCAGGAGCGCTTAATCTCATTGGCGGAGACACACTATTCGGACGCCTATGGGGATGCCAC CCCAGAGTCTACTATCCTTGCCTACAATTTGAGGCATGTTATTACCAGGCAATGGAAGCAGCAATTGAACTGAATTTGGCAACTGTGGAGGCTGGAGCTC AGGGTGAGCACAAGATTCAGCGTGGTTATCTACCAGTGACAACCTATAGCAGCCATTATTTGACAGATGAAGGTTTCCGGACAGCCATTCAAGATTTCTT AGTGAGAGAATCATCTCAGGTTAATATGGTTATGAAGATGTTGCGAGATGACGGTCCATTCAAGGATGGGATAGAATAG
AA sequence Show only first row Show all	>Lus10038137 pacid=23163931 polypeptide=Lus10038137 locus=Lus10038137.g ID=Lus10038137.BGIv1.0 annot-version=v1.0 MAAVSNCCCKPSPFLSQFPSRLSCFGIVLFKSTSDCYLGISIGICSSYGYAKNTRNRNASTITAIFWGPKKSVEPKELDLSLGDFILRESSPEGAPESQA LSKRVSLSIISSISEVPADAWDACHLDTTGLEKYNPFLSHCFLSCLEETGCAVKETGWAPSHIVAKDADGTVLGVVPLYLKSHSYGEFVFDHSWADAYYN FGARYYPKFQSCVPFTPVTGPRILIRNTPLRDQVFDVIVSTLKELTTKSELSSLHITFPTEKEWDRLRGSGFLQRIGMQYHWKNRNYKNFDEFLMDLKQK KRKSIRQERKKVSAQNLTMKRLRGYEIKGNHWDSFYTFYRNTTDNKWGTPYLTRDFFHAMGSKMGDQVLLVVAEEGDEVVAGALNLIGGDTLFGRLWGCH PRVYYPCLQFEACYYQAMEAAIELNLATVEAGAQGEHKIQRGYLPVTTYSSHYLTDEGFRTAIQDFLVRESSQVNMVMKMLRDDGPFKDGIE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G23390			unknown protein		Lus10038137 [exp]	0	1
AT4G01800		AtcpSecA, AGY1,...	Arabidopsis thaliana chloropla...		Lus10009973 [exp]	2.2	0.9370
AT5G12130		ATTERC, PDE149	PIGMENT DEFECTIVE 149, TELLURI...		Lus10014022 [exp]	2.4	0.9210
AT1G76730			NagB/RpiA/CoA transferase-like...		Lus10028565 [exp]	3.2	0.9064
AT2G28070		ABCG3	ATP-binding cassette G3, ABC-2...		Lus10021440 [exp]	5.2	0.8930
AT2G30320			Pseudouridine synthase family ...		Lus10026423 [exp]	6.2	0.8812
AT1G49380			cytochrome c biogenesis protei...		Lus10040510 [exp]	6.6	0.9072
AT1G64860		SIGB, SIG2, SIG...	RNApolymerase sigma subunit 2,...		Lus10020365 [exp]	8.1	0.8916
AT4G30825			Tetratricopeptide repeat (TPR)...		Lus10035818 [exp]	8.3	0.8787
AT1G56180			unknown protein		Lus10006532 [exp]	9.5	0.9007
AT1G03160		FZL	FZO-like (.1.2)		Lus10014666 [exp]	9.6	0.9158

Compare expression of checked genes

Lus10038137 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.