Gene [FLAX] | FIBexDB

External link

Symbol

Arabidopsis homologues

Show only best Show top 10

Locus ID	BLAST score/e-value	Alias	TAIR10 short description
AT4G39952	765 / 0		Pentatricopeptide repeat (PPR) superfamily protein (.1)
AT3G03580	397 / 1e-125		Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
AT1G18485	385 / 2e-120		Pentatricopeptide repeat (PPR) superfamily protein (.1)
AT4G18750	379 / 7e-119	DOT4	DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1)
AT4G21300	369 / 3e-115		Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
AT1G16480	369 / 1e-114		Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
AT1G69350	365 / 2e-114		Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
AT2G29760	350 / 2e-109	OTP81	ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
AT3G57430	351 / 2e-108	OTP84	ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
AT3G63370	348 / 2e-107	OTP86	ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)

Paralogs

Show only best Show top 10

Gene ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Lus10010688 [exp]	1143 / 0	AT4G39952	637 / 0.0	Pentatricopeptide repeat (PPR) superfamily protein (.1)
Lus10014707 [exp]	402 / 4e-127	AT3G63370	893 / 0.0	ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Lus10001220 [exp]	387 / 5e-122	AT3G57430	1110 / 0.0	ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Lus10004081 [exp]	387 / 3e-121	AT3G63370	893 / 0.0	ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Lus10030415 [exp]	380 / 1e-119	AT1G69350	814 / 0.0	Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Lus10033858 [exp]	373 / 1e-119	AT1G08070	422 / 4e-139	ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Lus10024220 [exp]	376 / 9e-118	AT1G74600	924 / 0.0	organelle transcript processing 87, pentatricopeptide (PPR) repeat-containing protein (.1)
Lus10007806 [exp]	376 / 1e-117	AT3G03580	967 / 0.0	Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Lus10002054 [exp]	375 / 3e-117	AT1G74600	930 / 0.0	organelle transcript processing 87, pentatricopeptide (PPR) repeat-containing protein (.1)

Poplar homologues

Show only best Show top 10

Locus ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Potri.005G074000 [exp]	1002 / 0	AT4G39952	892 / 0.0	Pentatricopeptide repeat (PPR) superfamily protein (.1)
Potri.009G067000 [exp]	418 / 1e-134	AT1G18485	500 / 8e-164	Pentatricopeptide repeat (PPR) superfamily protein (.1)
Potri.018G067500 [exp]	409 / 4e-129	AT4G13650	590 / 0.0	Pentatricopeptide repeat (PPR) superfamily protein (.1)
Potri.008G052200 [exp]	396 / 2e-125	AT2G39620	816 / 0.0	Pentatricopeptide repeat (PPR) superfamily protein (.1)
Potri.004G059400 [exp]	395 / 5e-125	AT4G18750	1110 / 0.0	DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Potri.008G093000 [exp]	382 / 2e-121	AT1G69350	832 / 0.0	Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Potri.011G156800 [exp]	378 / 5e-119	AT4G21300	842 / 0.0	Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Potri.015G047600 [exp]	382 / 7e-119	AT1G18485	1077 / 0.0	Pentatricopeptide repeat (PPR) superfamily protein (.1)
Potri.005G215500 [exp]	379 / 3e-118	AT3G63370	922 / 0.0	ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Potri.013G044700 [exp]	372 / 5e-117	AT3G22690	582 / 0.0	unknown protein

PFAM info

Clan ID	Clan name	Pfam ID	Pfam name	Pfam description
CL0020 [flax] [poplar]	TPR	PF01535 [flax] [poplar]	PPR	PPR repeat

Representative CDS sequence

Show only first row Show all

>Lus10038138 pacid=23163634 polypeptide=Lus10038138 locus=Lus10038138.g ID=Lus10038138.BGIv1.0 annot-version=v1.0

ATGCTTTCAGCCAAACTTCCTGGTCATCTCTTTAAGCGGTGTTCTCTTTCCACTACAGCTTACCTGAAGTCTCATATAAACTCCTTCCTATCGAACAAAA

CCCCTAGCTTCCAGCTGCTTCTTCAATCTCACGCTTTAATTATCACCTCTGGAAATGTAGGGAATGTCTTTCTATCCTCAAAACTTATCTCTTTCTATGC

ATCTTTCAACCGAACCCATTGCTCCACTAAAATTTTTGAGTTGGCATGCGACAAGGATACTTTCCTTTGGAACTCCATTGTACAGTCTTACTTTTCCAAT

AGAAATTATTCAGAGGCGTTTGAGATGTATATGCAGATGCGGCTGCATAATACCCCACCCACTCAGTTCACTATTCCCATGGTTGTGTCCTCCTGTGCTG

AGCTCTTGTGGCAGAAAGAGGGAGAAACCGTCCATGGGTTGGCAACAAAGTCTGGCCTTTTTCTAGGGAATTCAGCAGTCTCATCATCTTTTGTGTACAT

GTACGCAAAATGTGGTGTCATGGACTATGCGTCTCGTATATTTGAGAAGATTAGCGAGAGAGATGTGGTATCATGGACTGCTCTCATAATTGGCTATGTG

CATAATGGTGAGAGTGAAAAGGGTCTAGAGTGTCTCTGTCAGATGCATCGAAATGATCTAGATGGTGAGAATATAAATTTCAGGACACTGGAAGGAGGAT

TTCAAGCCTGTGTGAATTTAGGTGCTTTGGTTCAAGGAAGGTGTTTACATGGTTTTGCTGTGAAAACTGGACTTGGGTGTTGGCAATCTATTCAATCTTC

CCTTTTGTTAGTGTATTCTAAGTTTGGAAGCATTGAAGAAGCTTGCCGTTCTTTTTCTGAAGTGGAAAATAAGGATCTTTTCTCTTGGACTTCAATTATT

GGCCTCCACGCAAGGTTAGGGCTTATGAATGATTGTATGGCCTTGTTTTGGGATATGCTAGCTGCTGATAACTATCCAGATGAGATTGTTATGAGTTGCA

TGCTTGTAGGATTTGGCAACTCATCAAGGGTGGATGAAGGAAAAAGTTTTCATTGTCTTATCATAAGGAGAAACTTTACTGTAGATCAGATGGTCGCGGA

TGCTTTGCTGTCAATGTACTGCAAATTTGGACTTATAAGATCAGCAGAAAAGCTCTTTTATGGGCTAAATAAACGGAATGAAGAGTCTTGGAACTCTATG

GTTTGTGGTTTTGCTAAGGCAGGATGGGGAGACAAGTGCATAGACCTTTTCAGAGGAATGCAAAAACTGGGTTCTAGACCGAATTCTAATAGTTTGGTCT

CTGTATTAACTTCGTGTTCCCAACTCCGAGCAACTTCCTTCTGCCGCTCCCTTCACTGCTACATAATCAAGAATCTTATGGAAGACGACATGTCAATTGT

GAATTCACTCATAGACATGTACGGAAAGGATGGTAATTTAATTTCTGCGCGGAGGATTTTTTGTGGAAGAGATAAAGATATTGTCACTTGGAACACAATG

ATTGCAGCATACAATCATAACAAGTGTTTTACTGAGGCCATTTCATTATTTGATGAAATGATGCTGAAAAATGTAAAGCCTAATACAGCAACATTGGCAA

CTGTTCTTTCCGCTTGTTCTCAAGTTGCTGATTTGGAGAAAGGAGAAAAGGTTCATTATTTGATCAAGAATGAAGAGGAAATTGAGCTAAATGTATCCCT

TTCAACTGCACTAGTTGACATGTATGCAAAATGCGGACAACTCGAGAAATCGAGAGAAATTTTTAACGCGATGAAAGATAGAGATACTGTTTCTTGGAAT

GTAATGATTGCAGGTTATGCAATGCATGGGGACACAGAATCTGCAATCAAGTTATTCAAGCAAATGGAGCAGTCAAATGTTGTGCCAAATTCACTTACTT

TCCTACCTCTCCTCTCAGCTTGTGCTCATTCGGGGTTTGTTGATGAAGGCAAGCATCTTTTCAACAGAATGAAAAAGTATTCTGTGATTCCTACTCTAAA

GCATTATGCTTGTATTGTTGATCTTCTTGGAAGATCAGGTAATCTACTGGAAGCTGAAAAGTTAGTATTGTCAATGCCGATTCGACCAGATGGAGGTGTG

TGGGGTGCTTTGTTAAGTGCTTGTAAGATGCATGATGACATTGAGACAGGGATAAGGATTGCAAAGGAAGCGATTAAGGTAGATCCCAGAAATGATGGAT

ACTATGTAGTCATGTCTGATATGTATAGCTCCATTGGAAGATGGAGGGAGGAAGAAGAAGCAAGAGAAATGATGAAGGAAAGGGGCATAGAAAAGAGAGT

TGGTTGGAGTTTGGTCTAA

AA sequence

Show only first row Show all

>Lus10038138 pacid=23163634 polypeptide=Lus10038138 locus=Lus10038138.g ID=Lus10038138.BGIv1.0 annot-version=v1.0

MLSAKLPGHLFKRCSLSTTAYLKSHINSFLSNKTPSFQLLLQSHALIITSGNVGNVFLSSKLISFYASFNRTHCSTKIFELACDKDTFLWNSIVQSYFSN

RNYSEAFEMYMQMRLHNTPPTQFTIPMVVSSCAELLWQKEGETVHGLATKSGLFLGNSAVSSSFVYMYAKCGVMDYASRIFEKISERDVVSWTALIIGYV

HNGESEKGLECLCQMHRNDLDGENINFRTLEGGFQACVNLGALVQGRCLHGFAVKTGLGCWQSIQSSLLLVYSKFGSIEEACRSFSEVENKDLFSWTSII

GLHARLGLMNDCMALFWDMLAADNYPDEIVMSCMLVGFGNSSRVDEGKSFHCLIIRRNFTVDQMVADALLSMYCKFGLIRSAEKLFYGLNKRNEESWNSM

VCGFAKAGWGDKCIDLFRGMQKLGSRPNSNSLVSVLTSCSQLRATSFCRSLHCYIIKNLMEDDMSIVNSLIDMYGKDGNLISARRIFCGRDKDIVTWNTM

IAAYNHNKCFTEAISLFDEMMLKNVKPNTATLATVLSACSQVADLEKGEKVHYLIKNEEEIELNVSLSTALVDMYAKCGQLEKSREIFNAMKDRDTVSWN

VMIAGYAMHGDTESAIKLFKQMEQSNVVPNSLTFLPLLSACAHSGFVDEGKHLFNRMKKYSVIPTLKHYACIVDLLGRSGNLLEAEKLVLSMPIRPDGGV

WGALLSACKMHDDIETGIRIAKEAIKVDPRNDGYYVVMSDMYSSIGRWREEEEAREMMKERGIEKRVGWSLV

DESeq2's median of ratios [FLAX]

Coexpressed genes

Download tab-delimited text

Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G39952			Pentatricopeptide repeat (PPR)...		Lus10038138 [exp]	0	1
AT1G03310		ATISA2, ISA2, D...	BRANCHING ENZYME 2, ARABIDOPSI...		Lus10000661 [exp]	11.0	0.7175

Lus10038138 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.

Plant FIBer expression Database

Lus10038138 [FLAX]

DESeq2's median of ratios [FLAX]

Coexpressed genes

Lus10038138 coexpression network