Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10320 437 / 4e-144 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT1G27650 120 / 3e-30 C3HZnF ATU2AF35A U2 snRNP auxiliary factor small subunit, putative (.1.2) AT5G42820 118 / 2e-29 C3HZnF ATU2AF35B Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) AT3G44785 57 / 2e-10 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010687 [exp] 607 / 0 AT1G10320 288 / 9e-88 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Lus10008648 [exp] 126 / 9e-32 AT5G42820 358 / 6e-125 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Lus10009389 [exp] 125 / 9e-32 AT5G42820 362 / 3e-126 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Lus10003375 [exp] 124 / 3e-31 AT5G42820 357 / 3e-124 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Lus10002845 [exp] 124 / 3e-31 AT5G42820 355 / 1e-123 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Lus10020540 [exp] 117 / 1e-29 AT1G27650 323 / 7e-112 U2 snRNP auxiliary factor small subunit, putative (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G228600 [exp] 455 / 2e-150 AT1G10320 462 / 1e-151 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Potri.005G258000 [exp] 127 / 1e-32 AT1G27650 352 / 1e-122 U2 snRNP auxiliary factor small subunit, putative (.1.2) Potri.006G116700 [exp] 125 / 1e-31 AT5G42820 295 / 7e-100 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Potri.004G188900 [exp] 124 / 3e-31 AT5G42820 311 / 4e-106 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Potri.002G003000 [exp] 115 / 1e-28 AT1G27650 349 / 2e-121 U2 snRNP auxiliary factor small subunit, putative (.1.2) Potri.009G149600 [exp] 46 / 2e-06 AT1G27650 137 / 1e-41 U2 snRNP auxiliary factor small subunit, putative (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) CL0537 [flax] [poplar] CCCH_zf PF00642 [flax] [poplar] zf-CCCH Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Representative CDS sequence Show only first row Show all	>Lus10038139 pacid=23163837 polypeptide=Lus10038139 locus=Lus10038139.g ID=Lus10038139.BGIv1.0 annot-version=v1.0 ATGGCGGTTGGAGATGAACATGGGGGAGTAAGAGAAGAGCAGCTGGAAGTAGTAGAGAAGGGCGATAACTCATCGATCATACCGGTGAATAGGAAGGAGA AGAGGAAATCCCTTAAGAAGATGAGAAGGAAGCAGCTAAGGAAGGAGATGGCGGAGAAGGAAAGGGAGGAGGAGGAGAGAAGGATGAATGATCCAGAGGT GCAGAGGAGGTTGAACGAAACGGAGGAAATGGAGAGGTTGAGAATGGAGAGGGACAGAAAGGAGTTCGAGGAGAGGGAAAGGAAGTTGTTGGAGGAGATG GAACGGCAGAGGCAGGTCGAAGAGGAAGAAGCGGAGAGAAGAAATGCTCAGGAAGAAAAAGAGGAAGAGGAAGAAGCTAATAGAAGATTGCAGGCTTCTA AAGACGATGGGGTTGAGGAGGATAGTAACTGGGAATATGTAGAAGAAGGGCCACCTGAAATTATCTGGCAAGGAAATGAGATAATTCTCAAGAAGAAAAA GGTTCGAGTACCCAAAAAGAATGCTGATGTACAAACAAAAGAGGATGCCAATAGGCCAACGTCTAATCCTCTTCCTCCGGAATCTGAGGCATCAAGTCTG TCAGCACAAGAGATGCTTAAAAATGTTGCTCAAGAAGTACCAAACTTCGGTACTGAGCAGGATAAAGCTCATTGCCCGTTCCATTTAAAAACTGGAGCTT GTCGGTTTGGTCAGCGTTGCAGCCGTGTGCATTTTTATCCCGATAAAGCATGTACCCTGCTTATAAAAAATATGTACAATGGTCCTGGCCTTGCTTGGGA ACAAGATGAAGGGCTTGAGTGCACAGATGAAGAGGTTGAACGCAGTTATGAAGAATTCTATGAAGATGTGCATACAGAGTTTTTGAAGTATGGCCAGATA GTGAATTTCAAGGTTTGTAGAAACAGTTCATTCCACTTAAGGGGAAATGTGTATGTTCACTATAAGTCATTGGATTCTGCTGTACTTGCCTATCAGTTCT TCAATGGCCGCTACTTTGCTGGAAGACAGGTTACCTGTGAATTTGTCAATATCACTAGATGGAAGGTTGCCATATGTGGGGAGTACATGAAGTCAAGACT ACAGAATTGTTCTCGTGGAAGTGCCTGTAATTTTATTCATTGCTTTCGAAATCCTGGAGGAGACTATGAGTGGGCAGATTGGGATAAACCTCCACCAAGG TTTTGGATGGAAAAAATGACTGCTTTATTTGGTTACTCTGAAGCAACTGACCGTTATGTTGATAACGAAGAGAAAACAGGGAGGACACCTAGCAGCGCAA ATATAGACAGAGCTCGTCATTCTAGAAGATCCATGTCCAAGGATTTAGAGCACCAAAATGATCGCTATGGTAGAAAAAGGGATAGGGAAGATTATAGTGA AGGGCAGGGAAGAAATGTAGATAATGGAAAGAGGCGAAGCAAAAATATTGAGGAAGAAGATGATAGAAGGCTAGATTATAAATGTGAAGGTGGTTGGTCA GATAGGGACGTTGACAGCAACACAAAACGAGAGTACAGAGGGAGTAGCAGCCGAGCAAGAAGTAGTGGGAGACAGAGGTCAGATGTGGAAGGACATGGAA ATGGAAATGATGGTGGTAGGGATTGGGAGAGAGAAAGCAGGCACAGTAAAAGTGAAATTGATGTTTACAGTAGAAGAATGGCTTTCGGTGAAGAAGAGTT GGAGGATGATGGTAGGCATGATAAGAGAGGTGACATGGATGGTCTGTTAGAGAAAGAAAGCAGGGAAAGACGAAGGTGGAACGATGATCAAGAGTCAGAA GCTACCAAGATGTTAAAGCTGAAGAAGACGAAGAAGCTGGAAAGGGAAATTCGTTCAAATCGGAAACATTCAAGTAGAAAGCGTACGCAACGGGATTCCT CCATGCATGATTATGCAGAAGATCGGTGGGAAGGCAACTTTAAAAGTTAA
AA sequence Show only first row Show all	>Lus10038139 pacid=23163837 polypeptide=Lus10038139 locus=Lus10038139.g ID=Lus10038139.BGIv1.0 annot-version=v1.0 MAVGDEHGGVREEQLEVVEKGDNSSIIPVNRKEKRKSLKKMRRKQLRKEMAEKEREEEERRMNDPEVQRRLNETEEMERLRMERDRKEFEERERKLLEEM ERQRQVEEEEAERRNAQEEKEEEEEANRRLQASKDDGVEEDSNWEYVEEGPPEIIWQGNEIILKKKKVRVPKKNADVQTKEDANRPTSNPLPPESEASSL SAQEMLKNVAQEVPNFGTEQDKAHCPFHLKTGACRFGQRCSRVHFYPDKACTLLIKNMYNGPGLAWEQDEGLECTDEEVERSYEEFYEDVHTEFLKYGQI VNFKVCRNSSFHLRGNVYVHYKSLDSAVLAYQFFNGRYFAGRQVTCEFVNITRWKVAICGEYMKSRLQNCSRGSACNFIHCFRNPGGDYEWADWDKPPPR FWMEKMTALFGYSEATDRYVDNEEKTGRTPSSANIDRARHSRRSMSKDLEHQNDRYGRKRDREDYSEGQGRNVDNGKRRSKNIEEEDDRRLDYKCEGGWS DRDVDSNTKREYRGSSSRARSSGRQRSDVEGHGNGNDGGRDWERESRHSKSEIDVYSRRMAFGEEELEDDGRHDKRGDMDGLLEKESRERRRWNDDQESE ATKMLKLKKTKKLEREIRSNRKHSSRKRTQRDSSMHDYAEDRWEGNFKS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G10320	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10038139 [exp]	0	1
AT5G22080			Chaperone DnaJ-domain superfam...		Lus10004099 [exp]	2.0	0.9182
AT1G05180		AXR1	AUXIN RESISTANT 1, NAD(P)-bind...		Lus10031562 [exp]	4.5	0.8715
AT5G22080			Chaperone DnaJ-domain superfam...		Lus10013354 [exp]	7.3	0.9066
AT5G25060			RNA recognition motif (RRM)-co...		Lus10026892 [exp]	8.5	0.8254
AT5G05210			Surfeit locus protein 6 (.1.2)		Lus10014455 [exp]	8.5	0.8793
AT2G31970		ATRAD50, RAD50	DNA repair-recombination prote...		Lus10016644 [exp]	9.8	0.8345
AT4G08580			microfibrillar-associated prot...		Lus10020319 [exp]	14.3	0.8539
AT1G54340		ICDH	isocitrate dehydrogenase (.1)		Lus10012111 [exp]	16.1	0.8366
AT4G35900	bZIP	ATBZIP14, FD-1,...	Basic-leucine zipper (bZIP) tr...		Lus10017283 [exp]	16.1	0.8654
AT1G60200			splicing factor PWI domain-con...		Lus10030623 [exp]	17.4	0.8052

Compare expression of checked genes

Lus10038139 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.