Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12770 389 / 3e-132 ISE1, EMB1586 INCREASED SIZE EXCLUSION LIMIT 1, embryo defective 1586, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G60990 116 / 7e-29 DEA(D/H)-box RNA helicase family protein (.1) AT1G55150 111 / 7e-27 DEA(D/H)-box RNA helicase family protein (.1) AT1G77030 107 / 4e-25 hydrolases, acting on acid anhydrides, in phosphorus-containing anhydrides;ATP-dependent helicases;nucleic acid binding;ATP binding;RNA binding;helicases (.1) AT2G33730 107 / 5e-25 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G40700 106 / 6e-25 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G51280 106 / 7e-25 DEAD-box protein abstrakt, putative (.1) AT4G33370 104 / 2e-24 DEA(D/H)-box RNA helicase family protein (.1) AT5G19210 103 / 2e-24 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT4G34910 103 / 5e-24 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010686 [exp] 689 / 0 AT1G12770 647 / 0.0 INCREASED SIZE EXCLUSION LIMIT 1, embryo defective 1586, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10030523 [exp] 113 / 4e-27 AT2G40700 799 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10031761 [exp] 111 / 6e-27 AT5G60990 679 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10030075 [exp] 112 / 7e-27 AT3G58570 603 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10031182 [exp] 110 / 1e-26 AT5G60990 674 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10015187 [exp] 111 / 2e-26 AT2G33730 1083 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10031509 [exp] 111 / 2e-26 AT2G33730 837 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10004017 [exp] 110 / 2e-26 AT5G63630 797 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10030265 [exp] 109 / 1e-25 AT3G61690 1089 / 0.0 nucleotidyltransferases (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G123600 [exp] 442 / 1e-152 AT1G12770 711 / 0.0 INCREASED SIZE EXCLUSION LIMIT 1, embryo defective 1586, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.016G013900 [exp] 133 / 7e-35 AT5G60990 579 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.019G059100 [exp] 117 / 1e-28 AT2G40700 814 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.007G068800 [exp] 109 / 2e-26 AT5G60990 656 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.006G249100 [exp] 109 / 2e-26 AT5G60990 619 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.001G107300 [exp] 110 / 3e-26 AT1G63250 841 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.003G124100 [exp] 110 / 5e-26 AT1G63250 883 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.005G198300 [exp] 108 / 9e-26 AT4G09730 743 / 0.0 RH39 (.1) Potri.004G224000 [exp] 108 / 1e-25 AT5G51280 1072 / 0.0 DEAD-box protein abstrakt, putative (.1) Potri.005G185900 [exp] 108 / 2e-25 AT1G77030 1106 / 0.0 hydrolases, acting on acid anhydrides, in phosphorus-containing anhydrides;ATP-dependent helicases;nucleic acid binding;ATP binding;RNA binding;helicases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00270 [flax] [poplar] DEAD DEAD/DEAH box helicase
Representative CDS sequence Show only first row Show all	>Lus10038140 pacid=23163788 polypeptide=Lus10038140 locus=Lus10038140.g ID=Lus10038140.BGIv1.0 annot-version=v1.0 ATGCCGGCTTTAGCTTCAACAACTCGGCTCCTTGTTCTTGCTGCTGGACACTCTTTACTTCCTGCTAATGTGTCCATGTGGCGTCATTCGATTCGCCTCT TCAGTCGGGTTGCTAAAGATCATCATGGCCCTTTGACTCTCGCCAGCCTGGGATTTAACGAGGAGTCACTTGGCGATAGGGGAAGGAAGCTTAAATCTGA GGATGTGAGACTGAGGTCTCTAGTTGAAAATCAGAAGGCTAAAGTTAAGCCAGTTAGTATTAGAAATGTAAAGGCGACAACAAGATCAGTTGAGGATATA TCCCTTGCTCCATTCTCCGCAAAATCATTCTCCGAGCTTGGCCTTCCACCGTTGTTGATTGAGAGATTAGAGAGTGAAGGCTTCAATGTACCAACCGACG TCCAATCTGCTGCAGTTCCAACCATCTTAAAGGACCACGACATTGTGATACAGTCTTATACCGGGTCGGGCAAAACATTGGCATATCTCCTTCCTATACT AGCCGAGATCGGACCTCTCAAGGATGGTGTTAAGGCCAATGATGGTGGTGGGAAGAGGAAAGATATAGAAGCAGTAATTGTGGCTCCATCGAGAGAGCTT GGGATGCAGATAGTGAGGGAGCTCGAGAAGCTGTTAGGACCTGAGAACAAGAGAGTTGTTCAACAACTTGTTGGTGGTGCGAACCGGTCAAGACAAGAAG AAGCTCTGAAAAAGAACAAGCCAGCCATTGTTGTTGGCACACCCGGCAGAATAGCTGAGATCAGTGCTTCAGGTAAACTCCACACCCATGGCTGTCGTTT CCTGGTGCTGGACGAAGTCGATGAGCTTCTCTCGTTCAATTTCCGCGAGGCTATGCACCGGATATTGGATCATGTGGGAAGAAGACCAAGTGAAGATGCT AAAGGAATGAAGAGTGATCCCAATCGTCGCACTATTTTGGTATCTGCAACGGTTCCTTATTCAGTGATAAGGGCAGCTAGAAGTTGGGCGAATAATCCGG TTCTTGTGCAAGCCAAGAGTGTAATCCCGCTCGAATCGGTTCCTCCATCAGGACCTGTGGATTCGTTGTCGACTGAATCGGATTTTGCCCTGCTCGAGCT CATCTGA
AA sequence Show only first row Show all	>Lus10038140 pacid=23163788 polypeptide=Lus10038140 locus=Lus10038140.g ID=Lus10038140.BGIv1.0 annot-version=v1.0 MPALASTTRLLVLAAGHSLLPANVSMWRHSIRLFSRVAKDHHGPLTLASLGFNEESLGDRGRKLKSEDVRLRSLVENQKAKVKPVSIRNVKATTRSVEDI SLAPFSAKSFSELGLPPLLIERLESEGFNVPTDVQSAAVPTILKDHDIVIQSYTGSGKTLAYLLPILAEIGPLKDGVKANDGGGKRKDIEAVIVAPSREL GMQIVRELEKLLGPENKRVVQQLVGGANRSRQEEALKKNKPAIVVGTPGRIAEISASGKLHTHGCRFLVLDEVDELLSFNFREAMHRILDHVGRRPSEDA KGMKSDPNRRTILVSATVPYSVIRAARSWANNPVLVQAKSVIPLESVPPSGPVDSLSTESDFALLELI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G12770		ISE1, EMB1586	INCREASED SIZE EXCLUSION LIMIT...		Lus10038140 [exp]	0	1
AT3G54090		FLN1	fructokinase-like 1 (.1)		Lus10021118 [exp]	2.2	0.9372
AT2G37310			Pentatricopeptide repeat (PPR)...		Lus10025273 [exp]	3.5	0.9147
AT2G26900		BASS2	bile acid:sodium symporter fam...		Lus10007016 [exp]	4.2	0.9294
AT4G02990		RUG2, BSM	RUGOSA 2, BELAYA SMERT, Mitoch...		Lus10014877 [exp]	4.5	0.9184
AT3G61690			nucleotidyltransferases (.1)		Lus10030265 [exp]	6.2	0.9298
AT4G05020		NDB2	NAD(P)H dehydrogenase B2 (.1),...		Lus10002599 [exp]	7.5	0.8973
AT1G29880			glycyl-tRNA synthetase / glyci...		Lus10008792 [exp]	7.7	0.8823
AT2G30780			Tetratricopeptide repeat (TPR)...		Lus10029620 [exp]	8.5	0.9006
AT4G14170			Pentatricopeptide repeat (PPR)...		Lus10036095 [exp]	9.3	0.8728
AT1G06730			pfkB-like carbohydrate kinase ...		Lus10018778 [exp]	9.5	0.9071

Compare expression of checked genes

Lus10038140 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.