Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17020 64 / 1e-12 ATSRG1, SRG1 senescence-related gene 1 (.1) AT1G78550 57 / 5e-10 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G17010 54 / 6e-09 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G25300 52 / 3e-08 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT4G25310 44 / 2e-05 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026173 [exp] 164 / 5e-50 AT1G17020 443 / 5e-156 senescence-related gene 1 (.1) Lus10022292 [exp] 65 / 1e-12 AT1G17020 449 / 5e-159 senescence-related gene 1 (.1) Lus10032574 [exp] 64 / 1e-12 AT4G25300 419 / 2e-146 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10015252 [exp] 62 / 7e-12 AT1G17020 375 / 1e-129 senescence-related gene 1 (.1) Lus10011981 [exp] 58 / 3e-10 AT1G17020 375 / 2e-129 senescence-related gene 1 (.1) Lus10004582 [exp] 55 / 2e-09 AT1G17020 231 / 2e-74 senescence-related gene 1 (.1) Lus10011980 [exp] 55 / 3e-09 AT1G17020 382 / 1e-132 senescence-related gene 1 (.1) Lus10011979 [exp] 53 / 1e-08 AT1G17020 374 / 4e-129 senescence-related gene 1 (.1) Lus10011985 [exp] 53 / 2e-08 AT1G17020 367 / 4e-126 senescence-related gene 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G382400 [exp] 76 / 1e-16 AT1G17020 446 / 1e-157 senescence-related gene 1 (.1) Potri.001G381700 [exp] 69 / 3e-14 AT1G17020 436 / 2e-153 senescence-related gene 1 (.1) Potri.001G355100 [exp] 64 / 2e-12 AT1G17020 439 / 1e-154 senescence-related gene 1 (.1) Potri.009G025900 [exp] 61 / 2e-11 AT4G25300 410 / 3e-143 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.009G022800 [exp] 49 / 3e-07 AT1G17020 302 / 6e-101 senescence-related gene 1 (.1) Potri.010G201000 [exp] 43 / 4e-05 AT3G21420 290 / 5e-96 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.006G062500 [exp] 39 / 0.0008 AT5G20400 432 / 2e-152 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10038141 pacid=23158229 polypeptide=Lus10038141 locus=Lus10038141.g ID=Lus10038141.BGIv1.0 annot-version=v1.0 ATGGAAACCACAACAGAGCAGATGATGATGAGGCCTCCAACGAGGCATTCTTCGAAGCTAGGGAGGTCCCTTCTGGTGCCTAGTGTTCAGGAACTGGCAA AATCTTCAACTCTCACAAATTCTACTTCTGTTCCTCTAAGGTACATAAGGGATCCTGACCAGCAGCTTCTGGATAAGCCCTCTAATGTCATGATCAATCA CTGTAGTAACAAGAGCCCTGAAGACGAAGATGGCGATGATGATGATGAGGTGCCTGTAATTGACATGGAGAAGCTGCTTTCCCCTGAATCCATGCCTTCT CAACTCTCCAAACTCCATTTTGCCTCCACCCACTGGGGTTTCTTCCAGGTTCCTTTTACTTCTTTCTCTTTTACCTGTTTGTTGGTTTATTGGCTTGTTA TGGGCTACGAGTCCGAATTTAGAGTTAGAGAGAACGGAGTTATAACAAACCGTTTAACAATCATATACTAA
AA sequence Show only first row Show all	>Lus10038141 pacid=23158229 polypeptide=Lus10038141 locus=Lus10038141.g ID=Lus10038141.BGIv1.0 annot-version=v1.0 METTTEQMMMRPPTRHSSKLGRSLLVPSVQELAKSSTLTNSTSVPLRYIRDPDQQLLDKPSNVMINHCSNKSPEDEDGDDDDEVPVIDMEKLLSPESMPS QLSKLHFASTHWGFFQVPFTSFSFTCLLVYWLVMGYESEFRVRENGVITNRLTIIY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G17020		ATSRG1, SRG1	senescence-related gene 1 (.1)		Lus10038141 [exp]	0	1
AT1G17020		ATSRG1, SRG1	senescence-related gene 1 (.1)		Lus10042493 [exp]	4.0	0.8898
					Lus10036864 [exp]	5.3	0.8396
AT3G45140		ATLOX2, LOX2	ARABIODOPSIS THALIANA LIPOXYGE...		Lus10031237 [exp]	5.7	0.8618
AT1G33030			O-methyltransferase family pro...		Lus10009442 [exp]	12.8	0.8822
AT2G36690			2-oxoglutarate (2OG) and Fe(II...		Lus10014398 [exp]	16.1	0.8477
AT2G42430	AS2	ASL18, LBD16	ASYMMETRIC LEAVES2-LIKE 18, la...		Lus10014757 [exp]	20.6	0.7599
AT1G17420		ATLOX3, LOX3	Arabidopsis thaliana lipoxygen...		Lus10031239 [exp]	21.9	0.7855
AT3G45140		ATLOX2, LOX2	ARABIODOPSIS THALIANA LIPOXYGE...		Lus10031238 [exp]	23.0	0.7876
AT5G59040		COPT3	copper transporter 3 (.1)		Lus10021107 [exp]	26.7	0.7749
AT4G23030			MATE efflux family protein (.1...		Lus10017836 [exp]	29.4	0.8169

Compare expression of checked genes

Lus10038141 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.