Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14740 310 / 1e-104 RING/FYVE/PHD zinc finger superfamily protein (.1.2) AT2G31650 103 / 2e-24 SDG27, TRX1, ATX1 SET DOMAIN PROTEIN 27, homologue of trithorax (.1) AT1G05830 98 / 2e-22 SDG30, ATX2 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2) AT3G61740 97 / 7e-22 SDG14, ATX3 SET domain protein 14 (.1.2) AT5G53430 92 / 2e-20 SET29, ATX5, SDG29 SET domain group 29 (.1) AT4G27910 92 / 4e-20 SDG16, ATX4 SET domain protein 16 (.1) AT1G77800 72 / 9e-14 PHD finger family protein (.1.2) AT3G05670 48 / 6e-06 RING/U-box protein (.1) AT3G01460 48 / 9e-06 MBD9, ATMBD9 methyl-CPG-binding domain 9 (.1) AT5G58610 47 / 1e-05 PHD finger transcription factor, putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042494 [exp] 320 / 5e-111 AT3G14740 224 / 1e-73 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Lus10025508 [exp] 95 / 4e-21 AT1G05830 1256 / 0.0 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2) Lus10026725 [exp] 93 / 1e-20 AT1G05830 1272 / 0.0 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2) Lus10024777 [exp] 87 / 1e-18 AT1G77800 385 / 7e-120 PHD finger family protein (.1.2) Lus10019026 [exp] 78 / 2e-15 AT4G27910 1171 / 0.0 SET domain protein 16 (.1) Lus10012626 [exp] 72 / 2e-13 AT3G61740 1077 / 0.0 SET domain protein 14 (.1.2) Lus10009785 [exp] 70 / 7e-13 AT1G77800 388 / 3e-115 PHD finger family protein (.1.2) Lus10010121 [exp] 64 / 4e-11 AT3G61740 1008 / 0.0 SET domain protein 14 (.1.2) Lus10024778 [exp] 46 / 3e-05 AT1G77800 533 / 6e-174 PHD finger family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G382500 [exp] 360 / 3e-124 AT3G14740 338 / 3e-115 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Potri.011G103100 [exp] 353 / 1e-121 AT3G14740 339 / 1e-115 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Potri.014G098400 [exp] 100 / 6e-23 AT3G61740 1120 / 0.0 SET domain protein 14 (.1.2) Potri.014G146300 [exp] 99 / 2e-22 AT1G05830 1273 / 0.0 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2) Potri.002G232800 [exp] 98 / 2e-22 AT1G05830 1261 / 0.0 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2) Potri.002G170600 [exp] 97 / 5e-22 AT3G61740 1140 / 0.0 SET domain protein 14 (.1.2) Potri.005G171800 [exp] 94 / 6e-21 AT1G77800 522 / 2e-160 PHD finger family protein (.1.2) Potri.002G089400 [exp] 92 / 3e-20 AT1G77800 939 / 0.0 PHD finger family protein (.1.2) Potri.012G013900 [exp] 92 / 3e-20 AT5G53430 1423 / 0.0 SET domain group 29 (.1) Potri.015G014300 [exp] 89 / 3e-19 AT5G53430 1322 / 0.0 SET domain group 29 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0390 [flax] [poplar] zf-FYVE-PHD PF00628 [flax] [poplar] PHD PHD-finger
Representative CDS sequence Show only first row Show all	>Lus10038142 pacid=23158497 polypeptide=Lus10038142 locus=Lus10038142.g ID=Lus10038142.BGIv1.0 annot-version=v1.0 ATGGGTATCCACCAGTTCCTGACTCTGCCTCCTCTCAAGAGGTTTAGGCTGTTACAGCAGCAACAGCAAAATCAAGATCAAGATCCAGCCAACAAAGAAA ACATTCCCCCGTCAATTCCTTCCACTCAACTTCTTCCATCCAAGAAGCGAATCGAATCCAGGAATCAGCCGCTTCCTCCTCCTCCTCCTCCAGCTCCTGT AGTCTATTCCCTGCCTACCAAGAAAAGGATTTGGGCGTTTCAGCCTCCTGACCTTGACGAGGGCGACGAGACATCCGCCACTGTTGATTTTAGTAAGCAG CCGCCACCTCTCTCGCCTTTGGATCTGAATGTTAAATATAACCCAGATTTGGATGAAGGAGATCCGAAACAAGATGAAATCAAATCTGACGACGAAGATG ATGGAATCCTCTGTGCTGTCTGCCGTAGCACGGACGGTGATCCGTCGGATCCAATCGTGTTCTGTGACGGCTGCGATCTAATGGTTCACACCACCTGTTA CGGAAATCCGTTGATCAAAGGCGTCCCAGAAGGAGACTGGTTTTGTGAAGAGTGCTGTGTTTCTGAAGCCGAAAAGGGAAAGCTCTGTTGCTGCCTCTGC CCAAATGAAGGCGGGGGGCTGAAGCCTACAACAAGGGAAGGAAGATGGGCTCATATCGTCTGCGCGCTTTTGATCCCCGAGGTGTTCTTTGAGGATCCAG ATGGCCGAGAAGGGATTAATGTCTCCCAAGTTCCTAAGCGGAGATGGCAACAGAGATGCTATGTATGTAAGAGCAGGAAAGGGTGCGTTATTGAGTGCTC TGAGCCCAAATGTCCAATGGCTTTCCATATTACTTGTGGGTTGAAGGAGGAATTGAGCATCGAGTATAAGCAAGGGAGTAAGAGTAAGGAAGCAGTCATT GTTGCTGGCTTCTGCAGGAAGCACACCGACCTGTGGGAAAAGCAGCAAGAGACGGGGAAGTTCAAGATTGTGGCCAGAGGAAGCTAA
AA sequence Show only first row Show all	>Lus10038142 pacid=23158497 polypeptide=Lus10038142 locus=Lus10038142.g ID=Lus10038142.BGIv1.0 annot-version=v1.0 MGIHQFLTLPPLKRFRLLQQQQQNQDQDPANKENIPPSIPSTQLLPSKKRIESRNQPLPPPPPPAPVVYSLPTKKRIWAFQPPDLDEGDETSATVDFSKQ PPPLSPLDLNVKYNPDLDEGDPKQDEIKSDDEDDGILCAVCRSTDGDPSDPIVFCDGCDLMVHTTCYGNPLIKGVPEGDWFCEECCVSEAEKGKLCCCLC PNEGGGLKPTTREGRWAHIVCALLIPEVFFEDPDGREGINVSQVPKRRWQQRCYVCKSRKGCVIECSEPKCPMAFHITCGLKEELSIEYKQGSKSKEAVI VAGFCRKHTDLWEKQQETGKFKIVARGS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G14740			RING/FYVE/PHD zinc finger supe...		Lus10038142 [exp]	0	1
AT5G08020		ATRPA70B	ARABIDOPSIS THALIANA RPA70-KDA...		Lus10021153 [exp]	1.4	0.9838
AT5G08020		ATRPA70B	ARABIDOPSIS THALIANA RPA70-KDA...		Lus10040517 [exp]	2.0	0.9820
AT1G26840		ORC6, ATORC6	ARABIDOPSIS THALIANA ORIGIN RE...		Lus10037184 [exp]	2.2	0.9591
AT5G13060		ABAP1	ARMADILLO BTB protein 1 (.1)		Lus10022039 [exp]	2.4	0.9782
AT1G67320		EMB2813	EMBRYO DEFECTIVE 2813, DNA pri...		Lus10000602 [exp]	4.2	0.9591
AT5G19330		ARIA	ARM repeat protein interacting...		Lus10042583 [exp]	5.7	0.9607
AT2G16440		MCM4	MINICHROMOSOME MAINTENANCE 4, ...		Lus10028795 [exp]	6.6	0.9519
AT3G20490			unknown protein		Lus10019628 [exp]	7.0	0.9585
AT2G29570		ATPCNA2, PCNA2	A. THALIANA PROLIFERATING CELL...		Lus10005874 [exp]	8.8	0.9488
AT1G04020		ROW1, ATBARD1, ...	breast cancer associated RING ...		Lus10022895 [exp]	9.8	0.9514

Compare expression of checked genes

Lus10038142 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.