Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14750 276 / 9e-92 unknown protein AT1G55170 144 / 6e-41 unknown protein AT1G67170 145 / 8e-41 unknown protein AT2G30120 111 / 1e-28 unknown protein AT5G61920 88 / 4e-20 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013698 [exp] 456 / 1e-162 AT3G14750 298 / 3e-100 unknown protein Lus10005563 [exp] 450 / 1e-160 AT3G14750 288 / 2e-96 unknown protein Lus10035371 [exp] 153 / 8e-45 AT1G67170 284 / 2e-95 unknown protein Lus10030976 [exp] 151 / 3e-42 AT1G67170 294 / 1e-96 unknown protein Lus10037647 [exp] 141 / 8e-40 AT1G55170 233 / 6e-76 unknown protein Lus10015629 [exp] 140 / 2e-39 AT1G55170 236 / 2e-77 unknown protein Lus10026389 [exp] 136 / 4e-38 AT2G30120 159 / 2e-47 unknown protein Lus10015628 [exp] 134 / 1e-37 AT1G55170 211 / 3e-68 unknown protein Lus10042267 [exp] 128 / 4e-34 AT2G30120 157 / 2e-45 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G382700 [exp] 382 / 6e-134 AT3G14750 297 / 6e-100 unknown protein Potri.009G076700 [exp] 181 / 4e-55 AT3G14750 173 / 8e-52 unknown protein Potri.001G281400 [exp] 168 / 3e-50 AT2G30120 161 / 4e-48 unknown protein Potri.003G037900 [exp] 161 / 1e-47 AT1G55170 259 / 2e-86 unknown protein Potri.017G109700 [exp] 152 / 2e-42 AT1G67170 282 / 3e-91 unknown protein Potri.006G178100 [exp] 145 / 2e-41 AT5G61920 155 / 3e-46 unknown protein Potri.018G100100 [exp] 43 / 7e-05 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10038143 pacid=23158358 polypeptide=Lus10038143 locus=Lus10038143.g ID=Lus10038143.BGIv1.0 annot-version=v1.0 ATGTCCGGAAGAAACCGTGGACCACCTCCTCCAATGAAAGGCTTAGCACCTAGCCCTGGACTACAGTCTTCCATGCCTGATCACCATTATGGAAGGGGTC TAGGGTCACTGCCACATCATCATCCTGCATTACTGGAGGAAATTAGAGAACCACAGTTTGGTTTAGACCATCGACGACCACTCCCTCATCCTGCTGTGAT TGAGGAGCATCTAGCTGCTCAATACCAAGAGATTCAAGTTTTATTGGGTGACAACCAGCGATTGGCTGCCACTCATGTTGCATTGAAGCAGGAACTGGAG GCCACACAGCATGAATTGCAACGGATGGGTCAATATGCAGATTCATTACATCCCGATAGGGATATCCAGATGAGAGGATTGCATGAGAAGTCCATAAAAT TGGAAGCTGATCTTCGTGGGATGGAAGCAACGAGGAATGAGCTTCATCATGTTCGCTCTGATATTACGGAACTTACTGATGCCAAACAAGAACTTACAGG TAGGATGAAAATGATGACTCAGGACTTGGCTCGTTACAATACAGACTTGAAGCAAGTCCCAGCTTTGAAGACAGAGGTTGAAACTATGACACGAGACTTG CAGCGTGCACGAGCTGCTATTGAGTACGAGAAGAAAGGATATGCGGAGAATTTTGAGCATGGCCAGGTGATGGAGAAGAAATTGTTCTCAATGGCTCGAG AGTTAGAGAAGCTTCGTGCAGAGATAGCTATTGCAGAAAAGCAATCTCGCTGTGCTCCTAACGTAGGGAATCAAGCTTATAATCCAAACTATAACCATCC TGAAGCTGCATATGGTGGAAATTCTTATCCTGCTGGTTATGGGATGACCCCTGGGCAGCCGAGTGCAGAAAGCTTTTCACAGTATGGATTCCCTGGTGCG TGGGGAGGTGCATACGATATGCGAGCCCAAGGTCGATAA
AA sequence Show only first row Show all	>Lus10038143 pacid=23158358 polypeptide=Lus10038143 locus=Lus10038143.g ID=Lus10038143.BGIv1.0 annot-version=v1.0 MSGRNRGPPPPMKGLAPSPGLQSSMPDHHYGRGLGSLPHHHPALLEEIREPQFGLDHRRPLPHPAVIEEHLAAQYQEIQVLLGDNQRLAATHVALKQELE ATQHELQRMGQYADSLHPDRDIQMRGLHEKSIKLEADLRGMEATRNELHHVRSDITELTDAKQELTGRMKMMTQDLARYNTDLKQVPALKTEVETMTRDL QRARAAIEYEKKGYAENFEHGQVMEKKLFSMARELEKLRAEIAIAEKQSRCAPNVGNQAYNPNYNHPEAAYGGNSYPAGYGMTPGQPSAESFSQYGFPGA WGGAYDMRAQGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G14750			unknown protein		Lus10038143 [exp]	0	1
AT2G20790			clathrin adaptor complexes med...		Lus10034013 [exp]	1.0	0.9118
AT2G47900	TUB	AtTLP3	tubby like protein 3 (.1.2.3)		Lus10033977 [exp]	3.5	0.8593
AT1G79490		EMB2217	embryo defective 2217, Pentatr...		Lus10037517 [exp]	3.9	0.8861
AT2G47980		SCC3, ATSCC3	sister-chromatid cohesion prot...		Lus10015341 [exp]	4.7	0.8896
AT2G24640		UBP19	ubiquitin-specific protease 19...		Lus10020116 [exp]	4.9	0.8692
AT1G15720	MYB	TRFL5	TRF-like 5 (.1)		Lus10009912 [exp]	5.5	0.8628
AT5G57190		PSD2	phosphatidylserine decarboxyla...		Lus10009324 [exp]	5.7	0.8715
AT1G69630			F-box/RNI-like superfamily pro...		Lus10002239 [exp]	7.5	0.8336
AT4G16440			ferredoxin hydrogenases (.1)		Lus10038798 [exp]	8.0	0.8654
AT5G08120		MPB2C, ATMBP2C,...	movement protein binding prote...		Lus10017881 [exp]	8.1	0.8474

Compare expression of checked genes

Lus10038143 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.