Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14420 422 / 4e-149 Aldolase-type TIM barrel family protein (.1.2.3.4.5.6) AT4G18360 418 / 1e-147 Aldolase-type TIM barrel family protein (.1.2) AT3G14415 411 / 8e-145 Aldolase-type TIM barrel family protein (.1.2.3) AT3G14130 304 / 8e-103 Aldolase-type TIM barrel family protein (.1) AT3G14150 302 / 7e-102 Aldolase-type TIM barrel family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038507 [exp] 460 / 5e-164 AT4G18360 665 / 0.0 Aldolase-type TIM barrel family protein (.1.2) Lus10023302 [exp] 459 / 2e-163 AT4G18360 664 / 0.0 Aldolase-type TIM barrel family protein (.1.2) Lus10005590 [exp] 416 / 1e-146 AT3G14420 675 / 0.0 Aldolase-type TIM barrel family protein (.1.2.3.4.5.6) Lus10013725 [exp] 414 / 1e-145 AT3G14420 675 / 0.0 Aldolase-type TIM barrel family protein (.1.2.3.4.5.6) Lus10042495 [exp] 358 / 4e-125 AT4G18360 461 / 1e-164 Aldolase-type TIM barrel family protein (.1.2) Lus10013171 [exp] 295 / 5e-99 AT3G14130 521 / 0.0 Aldolase-type TIM barrel family protein (.1) Lus10008133 [exp] 289 / 1e-96 AT3G14130 518 / 0.0 Aldolase-type TIM barrel family protein (.1) Lus10037208 [exp] 223 / 2e-71 AT4G18360 303 / 6e-103 Aldolase-type TIM barrel family protein (.1.2) Lus10013173 [exp] 185 / 9e-59 AT3G14130 246 / 7e-82 Aldolase-type TIM barrel family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G065200 [exp] 425 / 3e-150 AT3G14420 651 / 0.0 Aldolase-type TIM barrel family protein (.1.2.3.4.5.6) Potri.001G394400 [exp] 425 / 3e-150 AT3G14420 668 / 0.0 Aldolase-type TIM barrel family protein (.1.2.3.4.5.6) Potri.011G112700 [exp] 422 / 3e-149 AT3G14420 669 / 0.0 Aldolase-type TIM barrel family protein (.1.2.3.4.5.6) Potri.003G069600 [exp] 299 / 8e-101 AT3G14130 502 / 2e-179 Aldolase-type TIM barrel family protein (.1) Potri.003G069400 [exp] 295 / 5e-99 AT3G14130 529 / 0.0 Aldolase-type TIM barrel family protein (.1) Potri.003G069300 [exp] 289 / 7e-97 AT3G14130 518 / 0.0 Aldolase-type TIM barrel family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0036 [flax] [poplar] TIM_barrel PF01070 [flax] [poplar] FMN_dh FMN-dependent dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10038144 pacid=23158238 polypeptide=Lus10038144 locus=Lus10038144.g ID=Lus10038144.BGIv1.0 annot-version=v1.0 ATGGAGATTACCAACGTTACGGAGTATGAAGAAATCGCGAGGCAGAAATTGCCCAAGATAGTGTTTCGGCCGAGGATTCTTGTGGATGTGAGCAAGATTG ACATGCCCACTACTGTATTGGGATTCAACATTTCCATGCCCATCATGATTGCTCCTACTGGTATGCAGAAAATGGCTCACCCTGATGGGGAGTATGCAAC AGCAAGAGCAGCTTCAGCAGCAGGCACCATTGTGAAAGACAGGAATGTGGTTACACAGTTGGTAAAAAGAGCTGAAAGAGCCGGTTTCAAGGCGATTGCA GTTACTGTTGACACTCCAAGACTCGGTCGAAGAGAAGCTGATATAAAGAACAGGGCTGGACTTGGCAAAATAGGCAAGACCAGTGACTTAGGATTGGCCT CCTACGTTGCTGGCCAAATTGACCGGACGCTTAGCTGTAAGGATGTGAAGTGGCTTCAAACCATCACTCCATTGCCAATTTTAGTAAAAGGGGTACTCAC TGCTGAAGATGCGAGGCTAGCAGTACAAAATGGAGCTGCAGGAATCATTGTGTCCAATCATGGAGCACGCCAGCTTGATTTTGTACCCGCCACCATCACA GCTCTGGAAGAGGTAGTGAAAGCTGCACAAGGCAGAGTTCCCGTGTTCTTGAATGGAGGAGTTCGTCGAGGGACCGACGTGTTCAAGTCGCTAGCATTGG GAGCTAGTGCCAACGGGGAAGGAGGAGTGAGAAAAGTGCTTCAGATGCTCAAGGATGAGCTTGAATTGACAATGGCGTTAAGCGGATGCACTTCGCTTAA CGAGATTTCTCGTAACCATATTGTCACTGACTGGGATGTCCCTCCTCGCACCCTGGCTAGCAGCAGGTTATGA
AA sequence Show only first row Show all	>Lus10038144 pacid=23158238 polypeptide=Lus10038144 locus=Lus10038144.g ID=Lus10038144.BGIv1.0 annot-version=v1.0 MEITNVTEYEEIARQKLPKIVFRPRILVDVSKIDMPTTVLGFNISMPIMIAPTGMQKMAHPDGEYATARAASAAGTIVKDRNVVTQLVKRAERAGFKAIA VTVDTPRLGRREADIKNRAGLGKIGKTSDLGLASYVAGQIDRTLSCKDVKWLQTITPLPILVKGVLTAEDARLAVQNGAAGIIVSNHGARQLDFVPATIT ALEEVVKAAQGRVPVFLNGGVRRGTDVFKSLALGASANGEGGVRKVLQMLKDELELTMALSGCTSLNEISRNHIVTDWDVPPRTLASSRL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G18360			Aldolase-type TIM barrel famil...		Lus10038144 [exp]	0	1
AT1G18720			Protein of unknown function (D...		Lus10001647 [exp]	5.3	1.0000
					Lus10002009 [exp]	5.8	1.0000
					Lus10002449 [exp]	6.5	1.0000
AT2G20815		QWRF3	QWRF domain containing 3, Fami...		Lus10039786 [exp]	8.2	0.9938
AT5G42800		M318, TT3, DFR	dihydroflavonol 4-reductase (....		Lus10006195 [exp]	8.4	1.0000
					Lus10006079 [exp]	9.8	1.0000
AT5G19580			glyoxal oxidase-related protei...		Lus10011111 [exp]	10.6	1.0000
					Lus10010414 [exp]	12.5	1.0000
AT1G14220			Ribonuclease T2 family protein...		Lus10015409 [exp]	13.5	1.0000
AT2G22620			Rhamnogalacturonate lyase fami...		Lus10010628 [exp]	13.5	1.0000

Compare expression of checked genes

Lus10038144 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.