Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14760 69 / 3e-14 unknown protein AT1G71740 43 / 3e-05 unknown protein AT1G49000 40 / 0.0004 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042496 [exp] 242 / 3e-80 AT3G14760 65 / 1e-12 unknown protein Lus10034266 [exp] 47 / 4e-06 AT1G71740 53 / 4e-09 unknown protein Lus10041497 [exp] 46 / 5e-06 AT1G71740 51 / 2e-08 unknown protein Lus10042773 [exp] 44 / 1e-05 AT1G71740 81 / 8e-21 unknown protein Lus10029742 [exp] 43 / 3e-05 AT1G71740 82 / 5e-21 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G382800 [exp] 76 / 2e-16 AT3G14760 109 / 3e-30 unknown protein Potri.011G103500 [exp] 72 / 2e-15 AT3G14760 121 / 6e-35 unknown protein Potri.010G130600 [exp] 42 / 7e-05 AT1G49000 77 / 2e-18 unknown protein Potri.005G198200 [exp] 41 / 0.0002 AT1G71740 112 / 5e-33 unknown protein Potri.006G226200 [exp] 40 / 0.0006 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10038145 pacid=23158445 polypeptide=Lus10038145 locus=Lus10038145.g ID=Lus10038145.BGIv1.0 annot-version=v1.0 ATGGGCAGCGTATGGATCAGCAAATCAGAGGAGAAGCTGAAGCACATCATAACAACCACTCCAGATTCGATAGTAATAGCCATGTTCACTCTGTTCAGCA TCGCCCTCTTCGCTGTCATACTGTTCATCCTTATCCTCATAATTAGGAAGAGAAAATCCCAGCAGCTAATAAGTGAACATCGTATGCTGATGGATATGGA ATATGGGTGGTCGACAGAGGATGAAGTCGACGATGATGCTAAGTTGAGTGCTGCGGCGGGTTCTGGGAGATGGCTGACGATAAGGAAGGTGTTGATGAGT TCGATGAGGTGGAGTAAAGGAAGCAGGTGGGATGAAGAAGAGGAATTGATAATTAGTAGCAGCATTATTAATAGCTGCTGTACTAGTAGTAATAACAGCT TTTGCAGTCTTACTTGTTTGGGGGTGGAGGGGGAGGATCAGGAGTCTAGAGTAAGTTCAGTTTTGAAGAAGGTAACAGGACCACTGCGGCGGCCGCTAGG AAAGGAGGTTGTAAGAGGATCTGGCATTTCTGATGATGAGTGGAGGAAGAGGCAGCTGGCGGCATCAGAGGCGGTATGGCAGAGGCCGATATTGATGGGG GAGAAATGTGAGCTGCCAAAGCATAGTGGCCTTATCTTGTACGATCAAACTGGTCGCCCACTGCATCACTCTGCCTCCTGCTCTCAGTATCAACATCTTC ATCACCCAACACCAGGTCAGTATTCTTCATACTGTTGTTAG
AA sequence Show only first row Show all	>Lus10038145 pacid=23158445 polypeptide=Lus10038145 locus=Lus10038145.g ID=Lus10038145.BGIv1.0 annot-version=v1.0 MGSVWISKSEEKLKHIITTTPDSIVIAMFTLFSIALFAVILFILILIIRKRKSQQLISEHRMLMDMEYGWSTEDEVDDDAKLSAAAGSGRWLTIRKVLMS SMRWSKGSRWDEEEELIISSSIINSCCTSSNNSFCSLTCLGVEGEDQESRVSSVLKKVTGPLRRPLGKEVVRGSGISDDEWRKRQLAASEAVWQRPILMG EKCELPKHSGLILYDQTGRPLHHSASCSQYQHLHHPTPGQYSSYCC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G14760			unknown protein		Lus10038145 [exp]	0	1
AT2G48010		RKF3	receptor-like kinase in in flo...		Lus10008186 [exp]	6.3	0.8103
AT1G01180			S-adenosyl-L-methionine-depend...		Lus10013195 [exp]	8.6	0.8700
AT5G15740		RRT1	O-fucosyltransferase family pr...		Lus10019195 [exp]	12.1	0.8677
AT5G15740		RRT1	O-fucosyltransferase family pr...		Lus10036832 [exp]	14.4	0.8674
AT2G38150			alpha 1,4-glycosyltransferase ...		Lus10027772 [exp]	17.2	0.8673
AT2G38150			alpha 1,4-glycosyltransferase ...		Lus10027771 [exp]	18.0	0.8667
					Lus10003755 [exp]	19.6	0.8666
AT5G52280			Myosin heavy chain-related pro...		Lus10029303 [exp]	22.4	0.8009
AT2G38150			alpha 1,4-glycosyltransferase ...		Lus10035525 [exp]	22.8	0.8591
					Lus10038295 [exp]	23.2	0.8663

Compare expression of checked genes

Lus10038145 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.