Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78600 271 / 2e-90 CO BBX22, DBB3, STH3, LZF1 SALT TOLERANCE HOMOLOG 3, DOUBLE B-BOX 3, B-box domain protein 22, light-regulated zinc finger protein 1 (.1.2) AT1G06040 149 / 2e-44 CO BBX24, STO SALT TOLERANCE, B-box domain protein 24, B-box zinc finger family protein (.1.2) AT2G31380 142 / 9e-41 CO STH salt tolerance homologue (.1) AT4G39070 134 / 1e-37 CO B-box zinc finger family protein (.1) AT4G10240 131 / 1e-37 CO B-box zinc finger family protein (.1) AT1G75540 133 / 2e-36 CO LHUS, AtBBX21, STH2 long hypocotyl under shade, B-box domain protein 21, B BOX 21, salt tolerance homolog2 (.1) AT2G21320 99 / 3e-25 CO B-box zinc finger family protein (.1) AT4G38960 96 / 1e-23 CO B-box type zinc finger family protein (.1.2.3) AT5G15850 80 / 9e-17 CO COL1, ATCOL1 CONSTANS-like 1 (.1) AT3G02380 77 / 8e-16 CO ATCOL2, COL2 CONSTANS-like 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042498 [exp] 562 / 0 AT1G78600 274 / 1e-91 SALT TOLERANCE HOMOLOG 3, DOUBLE B-BOX 3, B-box domain protein 22, light-regulated zinc finger protein 1 (.1.2) Lus10028791 [exp] 137 / 3e-39 AT1G75540 206 / 9e-66 long hypocotyl under shade, B-box domain protein 21, B BOX 21, salt tolerance homolog2 (.1) Lus10017495 [exp] 136 / 1e-38 AT1G75540 202 / 2e-64 long hypocotyl under shade, B-box domain protein 21, B BOX 21, salt tolerance homolog2 (.1) Lus10027041 [exp] 135 / 7e-38 AT1G06040 298 / 1e-102 SALT TOLERANCE, B-box domain protein 24, B-box zinc finger family protein (.1.2) Lus10025579 [exp] 134 / 7e-38 AT1G06040 297 / 2e-102 SALT TOLERANCE, B-box domain protein 24, B-box zinc finger family protein (.1.2) Lus10031087 [exp] 100 / 2e-25 AT4G38960 229 / 5e-77 B-box type zinc finger family protein (.1.2.3) Lus10035472 [exp] 100 / 2e-25 AT4G38960 229 / 4e-77 B-box type zinc finger family protein (.1.2.3) Lus10018076 [exp] 96 / 2e-23 AT4G38960 215 / 6e-72 B-box type zinc finger family protein (.1.2.3) Lus10020105 [exp] 75 / 5e-15 AT5G24930 398 / 6e-138 CONSTANS-like 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G105400 [exp] 352 / 2e-122 AT1G78600 284 / 1e-95 SALT TOLERANCE HOMOLOG 3, DOUBLE B-BOX 3, B-box domain protein 22, light-regulated zinc finger protein 1 (.1.2) Potri.001G384000 [exp] 331 / 5e-114 AT1G78600 284 / 1e-95 SALT TOLERANCE HOMOLOG 3, DOUBLE B-BOX 3, B-box domain protein 22, light-regulated zinc finger protein 1 (.1.2) Potri.017G028300 [exp] 151 / 2e-44 AT2G31380 273 / 4e-93 salt tolerance homologue (.1) Potri.017G028301 [exp] 149 / 9e-44 AT1G06040 274 / 3e-93 SALT TOLERANCE, B-box domain protein 24, B-box zinc finger family protein (.1.2) Potri.007G130100 [exp] 142 / 5e-41 AT1G06040 264 / 1e-89 SALT TOLERANCE, B-box domain protein 24, B-box zinc finger family protein (.1.2) Potri.004G161000 [exp] 141 / 5e-41 AT4G39070 192 / 6e-62 B-box zinc finger family protein (.1) Potri.002G028200 [exp] 141 / 9e-40 AT1G75540 252 / 2e-82 long hypocotyl under shade, B-box domain protein 21, B BOX 21, salt tolerance homolog2 (.1) Potri.005G234500 [exp] 139 / 5e-39 AT1G75540 185 / 2e-56 long hypocotyl under shade, B-box domain protein 21, B BOX 21, salt tolerance homolog2 (.1) Potri.009G122000 [exp] 134 / 5e-38 AT4G39070 202 / 1e-65 B-box zinc finger family protein (.1) Potri.005G117100 [exp] 105 / 2e-27 AT2G21320 192 / 4e-63 B-box zinc finger family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00643 [flax] [poplar] zf-B_box B-box zinc finger
Representative CDS sequence Show only first row Show all	>Lus10038147 pacid=23158368 polypeptide=Lus10038147 locus=Lus10038147.g ID=Lus10038147.BGIv1.0 annot-version=v1.0 ATGAAGATACAGTGCAACGTGTGTGAGGCAGCGGAGGCGAAAGTGCTTTGCTGCGCAGACGAGGCAGCATTGTGTTGGGCTTGCGACGAGAAAGTACACG CCGCCAACAAGCTTGCCAGCAAACACCAGAGGGTTCCCCTTTCCAATTCTTCCCCACAATTGCCCAAATGCGACATTTGCCAGGAGATGGCAGGCCTTTT CTTTTGCCTAGAAGATAGAGCTTTGCTCTGCAGGAAATGTGATGTAGCCATTCACACGGCAAATGAACATGTTTCTGTTCATCAAAGATTTTTGCTTACA GGGGTTAAGGTAGGCCTTCAGCCTACTGATCCTGTTGGCTCTTCTTCCTCTGCCAAGTCACTTTCCGATGCAAAGATGTCAGGGGCAAAGTCTGAATTTG TTTCAGGAAGAGTCTCCTCGATGCCTTTTGCGACTTCGTCAAATGATGCTCCATCTGAGGATGGAATGAGGAGCTCTGAACCTCTGAAGGTTCCATTTGC AGAGGGTAACAATGCTGGAGCCATCCCGCAGTGGCAACTAGATGATTTATTCAGTCTAACTGGGTTCAACCAGAATTACAGCTACGTGGGTAATGGTTCA TCAAAGGCTGACAGTGGGAAGCGCAGTGAGTCTGATAACTCGGCGATGATGAGATCAGGGGAGGACGAAATGGATAATGGGGAGTGCTTGGGTCAGGCTT CAGAGAGCTGTTGGGCAGTGCCAGAGATGCCATCACCACCGACTGCATCGGGGCTTTGTTGGCTGAAAAGCTCAAGGGATCACTGTAATGTTGAGGATTT CGTGCCTGATATAAGATGCTCAGGAGCTAAGACCGACCACGATGATGAGAAAGAACACGCGAGAGTCCCTAAAAGACGAAGGCAACAACATTGGACTCTC TTCTGA
AA sequence Show only first row Show all	>Lus10038147 pacid=23158368 polypeptide=Lus10038147 locus=Lus10038147.g ID=Lus10038147.BGIv1.0 annot-version=v1.0 MKIQCNVCEAAEAKVLCCADEAALCWACDEKVHAANKLASKHQRVPLSNSSPQLPKCDICQEMAGLFFCLEDRALLCRKCDVAIHTANEHVSVHQRFLLT GVKVGLQPTDPVGSSSSAKSLSDAKMSGAKSEFVSGRVSSMPFATSSNDAPSEDGMRSSEPLKVPFAEGNNAGAIPQWQLDDLFSLTGFNQNYSYVGNGS SKADSGKRSESDNSAMMRSGEDEMDNGECLGQASESCWAVPEMPSPPTASGLCWLKSSRDHCNVEDFVPDIRCSGAKTDHDDEKEHARVPKRRRQQHWTL F

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G78600	CO	BBX22, DBB3, ST...	SALT TOLERANCE HOMOLOG 3, DOUB...		Lus10038147 [exp]	0	1
AT5G22620			phosphoglycerate/bisphosphogly...		Lus10015442 [exp]	1.0	0.9318
AT5G06060			NAD(P)-binding Rossmann-fold s...		Lus10001560 [exp]	2.4	0.9252
AT3G26580			Tetratricopeptide repeat (TPR)...		Lus10036856 [exp]	5.2	0.8759
AT2G04700			ferredoxin thioredoxin reducta...		Lus10039449 [exp]	10.2	0.9184
AT2G32640			Lycopene beta/epsilon cyclase ...		Lus10015142 [exp]	14.9	0.8782
AT5G47240		ATNUDT8	nudix hydrolase homolog 8 (.1)		Lus10040169 [exp]	15.6	0.8715
AT1G51110			Plastid-lipid associated prote...		Lus10010444 [exp]	18.1	0.9035
AT2G04700			ferredoxin thioredoxin reducta...		Lus10039468 [exp]	20.9	0.8874
AT3G15840		PIFI	post-illumination chlorophyll ...		Lus10025847 [exp]	21.3	0.8780
AT1G07280			Tetratricopeptide repeat (TPR)...		Lus10001206 [exp]	22.4	0.8715

Compare expression of checked genes

Lus10038147 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.