Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G53470 869 / 0 MSL4 mechanosensitive channel of small conductance-like 4 (.1) AT1G78610 865 / 0 MSL6 mechanosensitive channel of small conductance-like 6 (.1) AT3G14810 848 / 0 MSL5 mechanosensitive channel of small conductance-like 5 (.1.2) AT2G17000 693 / 0 Mechanosensitive ion channel family protein (.1) AT2G17010 485 / 5e-159 Mechanosensitive ion channel family protein (.1) AT5G12080 445 / 2e-144 ATMSL10, MSL10 mechanosensitive channel of small conductance-like 10 (.1.2.3) AT5G19520 414 / 3e-132 ATMSL9, MSL9 mechanosensitive channel of small conductance-like 9 (.1) AT1G49260 44 / 9e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042499 [exp] 1524 / 0 AT1G53470 985 / 0.0 mechanosensitive channel of small conductance-like 4 (.1) Lus10005556 [exp] 881 / 0 AT1G53470 758 / 0.0 mechanosensitive channel of small conductance-like 4 (.1) Lus10022654 [exp] 750 / 0 AT1G78610 817 / 0.0 mechanosensitive channel of small conductance-like 6 (.1) Lus10025092 [exp] 699 / 0 AT1G78610 779 / 0.0 mechanosensitive channel of small conductance-like 6 (.1) Lus10023990 [exp] 696 / 0 AT1G78610 762 / 0.0 mechanosensitive channel of small conductance-like 6 (.1) Lus10013692 [exp] 578 / 0 AT1G53470 496 / 6e-170 mechanosensitive channel of small conductance-like 4 (.1) Lus10004153 [exp] 563 / 0 AT2G17700 611 / 0.0 serine/threonine/tyrosine kinase 8, ACT-like protein tyrosine kinase family protein (.1) Lus10016423 [exp] 454 / 2e-147 AT5G12080 786 / 0.0 mechanosensitive channel of small conductance-like 10 (.1.2.3) Lus10036586 [exp] 451 / 1e-146 AT5G12080 573 / 0.0 mechanosensitive channel of small conductance-like 10 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G384100 [exp] 1038 / 0 AT1G78610 852 / 0.0 mechanosensitive channel of small conductance-like 6 (.1) Potri.011G105500 [exp] 1036 / 0 AT1G78610 869 / 0.0 mechanosensitive channel of small conductance-like 6 (.1) Potri.004G178900 [exp] 816 / 0 AT1G78610 819 / 0.0 mechanosensitive channel of small conductance-like 6 (.1) Potri.005G246600 [exp] 659 / 0 AT1G53470 644 / 0.0 mechanosensitive channel of small conductance-like 4 (.1) Potri.006G144100 [exp] 491 / 2e-161 AT5G12080 611 / 0.0 mechanosensitive channel of small conductance-like 10 (.1.2.3) Potri.006G222500 [exp] 486 / 3e-159 AT5G12080 766 / 0.0 mechanosensitive channel of small conductance-like 10 (.1.2.3) Potri.013G073000 [exp] 479 / 1e-157 AT5G12080 536 / 0.0 mechanosensitive channel of small conductance-like 10 (.1.2.3) Potri.013G072800 [exp] 468 / 2e-153 AT5G12080 512 / 2e-172 mechanosensitive channel of small conductance-like 10 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00924 [flax] [poplar] MS_channel Mechanosensitive ion channel
Representative CDS sequence Show only first row Show all	>Lus10038148 pacid=23158148 polypeptide=Lus10038148 locus=Lus10038148.g ID=Lus10038148.BGIv1.0 annot-version=v1.0 ATGTCAGCCGATTCCAGTGACCGCAGGGAGTTACTCCTCAACATGAACCGCACTTCCCCCGGCCGACTACTCCCCGCTGGCAGCCCCACGTCCGCTGCTC CCCCGGGGAATATATGGAGAGAATCTAGCTATGATTTCTTTCAAGGCGTCGATAAAGATAGAAAGAGGGAGTCAGAGCACCATGAAGATGGGAGCGAAAG CTACCGATTTGATTTTAATCCCACTCGTGGAAGTGGGAACAATGCCGGGCCAGCTCCGACAGAGGAGGATCCGCCGTCCAAGCTCATCGGTCAGTTTCTA CACAAGCAACAGGCGTCCGGTGAGTTCTCTTTGGATATGGACTTGGAGATGGCGGAGCTTCAGAACGGCAATGGCGATTCGTTGCTGCGACGGAATCTAG CTCCGGTTTCCGAGTCGCCTGTGTCGCTTCACCAGCGAGTCTCGTTCGAGACGAGTGAATCGTTAATGAGGAAGCAGGCCGCCAGATTCAACGGATCACC GGGCATCCAGTCCAACACTGGCAGTCCTGCTGCTCTTGATGGAGCAGAGGTTGTCAAGTGCAGTTCCAGAGGTGACGGTTCGTTTTCCAGCAACTCATCG TTTAAGAGGAAATCTAACTTGTTCAAGGAGAGAACCAAATCCAGATTGATGGATCCACCGCATCCTCCGCAGCAACAGCAGCCGACCTCTCAGCCGGAGA AATCTGGACGGATGCCTGGCAAAAAATCGGGGCAGTTGAAATCTGGATTTGTAGGACGGAGCAGTCACATTGACGAGGAAGAAGATGATCCGTTGCTGGA AGAGGATTTGCCTGAAGGATTGACTAACGATAAGCTCGGTATCTGGACTGTTTTAGAATGGGTTAGCTTGATTTTACTTATTGCTGCTTTTGTGTGTAGT CTTACTATTCCAATACTGAAGACGAAAGTCTTGTGGAACCTTCCGCTCTGGAAATGGGAAGTAATGGTTTTAGTGCTGATATGCGGGAGGTTAGTCTCAG GATGGGTGATTCGGTTCATTGTGTTCTTCATTGAGAGGAACTTTCTGCTGAGAAAACGGGTTCTGTATTTCGTTTATGGAATTAAGAAGCCTGTGCAGAA CTGTCTGTGGTTAGGACTGGTGTTGATAGCTTGGCATTTCCTGTTTGATAAGAAAGTTGAGAAGGAGACTGGAAGTAGATCTCTGAGGTATGTAACAAAG GTTCTTCTATGCTTGGTGGTTGGGACATTGTTGTGGCTGGTGAAGACCCTTGTTGTCAAAGTTCTTGCTTCTTCTTTCCACATGAGCACTTACTTTGATC GGATTCAGGAGTCGTTGTTTAACCAATATGTAATCGAGACGCTTTCTGGTCCTCCGTTGGTTGAAATTCAAAAGAATGAAGAGGAGGAGGAAAGACTTGT AGAAGAGATGCAGAAGTTGCATAATGCTGGTATTGAAGTCCCTCCGGCTCTTAAAGCAGTTACGTGTCCTTCCCCTCAGCCTAACAGGTTGATTGGCAGT GGTCGGCTTCAGAAAAGTCCTCGAGTTGGTACACCTCGAGCTTCTGGTGCTTTCGCCAACACGGACAAAGAGGGTGAAGATGCAATAACAATTGATCACT TGCATAAACTGAATCATAAGAATGTTTCTGCTTGGAATATGAAGAGACTGATGAACATAATCAGACATGGGTCTCTGTCGACTCTGGATGAACAAATAAA GGACTCGAATCACGATGATGATGAATCAACTACGAAAATCAGAAGCGAATATGAAGCAAAGGCTGCTGCGAGGAAAATATTTCAAAATGTGGCCAAGCCA GGTTCGAGATATATTTACTTTGAAGATCTCTTGCGCTTTATGGAAGAAGATGAGGCTACAAAAGCTATGAGTTTTTTTGAAGGAGCAGCAGAAAGCCAGA AGATCAGCAAGTCATGCTTAAAGAACTGGGTGGTCAATGCTTTCAGAGACAGAAGAGCGCTTGCTTTGACCCTAAACGATACAAAAACTGCAGTGAACAA GTTGCATCGGGTTGTGAATGTCCTGGTCGCCATCCTGATCATCATCATCTGGCTTCTCATGTTGGGAATAGCCACGACAAAATTCCTGCTCTTCCTAAGC TCCCAACTTGTTCTTGTAGCATTCATTTTCGGGAACACCTGCAAAACCGTATTCGAAGCTATCGTGTTCTTATTTGTGATGCACCCATTTGACGTAGGCG ACCGCTGTGAAATAGACGGAGTTCAGATGATTGTTGAAGAGATGAACATTCTCACCACCATTTTCCTAAGATTCGATAACCAGAAGATAATTATCCCCAA CAGCGTCCTTGCCACCAAATCCATCGGGAACTACTACCGCAGCCCAGACATGGGAGACGGAATTGAGTTCTTCATTCATATAGCTACTCCAACTGAGAAG ATAGCTGCTGTGAGGCAAAGAATCAACGCGTATATTGAAAATAAAAAGGAGCACTGGTACCCGCAACCGTTGATCATACTAAAGGAGGCGGAGGGTTTGA ACAGAGTGAGGTTAGCGATATGGCCGACGCACAGGATGAACCATCAAGACATGGGAGAAAGGTTTGTGAGGAGATCATTGTTAATAGAAGAGATGGTTAA GATATTCAAGGAGCTGGACATGCAGTACCGGCTGCTGCCGATGGACATCAACGTACGGGCGTTGCCACCGGTGTCGTCGGAGAGAGTCCCACCGAGCTGG GCAGCTTGA
AA sequence Show only first row Show all	>Lus10038148 pacid=23158148 polypeptide=Lus10038148 locus=Lus10038148.g ID=Lus10038148.BGIv1.0 annot-version=v1.0 MSADSSDRRELLLNMNRTSPGRLLPAGSPTSAAPPGNIWRESSYDFFQGVDKDRKRESEHHEDGSESYRFDFNPTRGSGNNAGPAPTEEDPPSKLIGQFL HKQQASGEFSLDMDLEMAELQNGNGDSLLRRNLAPVSESPVSLHQRVSFETSESLMRKQAARFNGSPGIQSNTGSPAALDGAEVVKCSSRGDGSFSSNSS FKRKSNLFKERTKSRLMDPPHPPQQQQPTSQPEKSGRMPGKKSGQLKSGFVGRSSHIDEEEDDPLLEEDLPEGLTNDKLGIWTVLEWVSLILLIAAFVCS LTIPILKTKVLWNLPLWKWEVMVLVLICGRLVSGWVIRFIVFFIERNFLLRKRVLYFVYGIKKPVQNCLWLGLVLIAWHFLFDKKVEKETGSRSLRYVTK VLLCLVVGTLLWLVKTLVVKVLASSFHMSTYFDRIQESLFNQYVIETLSGPPLVEIQKNEEEEERLVEEMQKLHNAGIEVPPALKAVTCPSPQPNRLIGS GRLQKSPRVGTPRASGAFANTDKEGEDAITIDHLHKLNHKNVSAWNMKRLMNIIRHGSLSTLDEQIKDSNHDDDESTTKIRSEYEAKAAARKIFQNVAKP GSRYIYFEDLLRFMEEDEATKAMSFFEGAAESQKISKSCLKNWVVNAFRDRRALALTLNDTKTAVNKLHRVVNVLVAILIIIIWLLMLGIATTKFLLFLS SQLVLVAFIFGNTCKTVFEAIVFLFVMHPFDVGDRCEIDGVQMIVEEMNILTTIFLRFDNQKIIIPNSVLATKSIGNYYRSPDMGDGIEFFIHIATPTEK IAAVRQRINAYIENKKEHWYPQPLIILKEAEGLNRVRLAIWPTHRMNHQDMGERFVRRSLLIEEMVKIFKELDMQYRLLPMDINVRALPPVSSERVPPSW AA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G53470		MSL4	mechanosensitive channel of sm...		Lus10038148 [exp]	0	1
AT3G51950	C3HZnF		Zinc finger (CCCH-type) family...		Lus10009964 [exp]	8.4	0.8841
AT1G08260		ESD7, EMB142, E...	TILTED 1, EARLY IN SHORT DAYS ...		Lus10020576 [exp]	8.6	0.9009
AT2G02955		MEE12	maternal effect embryo arrest ...		Lus10004454 [exp]	11.0	0.8053
AT4G34160		CYCD3;1	CYCLIN D3;1 (.1)		Lus10024796 [exp]	13.5	0.8605
AT3G05470			Actin-binding FH2 (formin homo...		Lus10029897 [exp]	14.4	0.8684
AT4G16807			unknown protein		Lus10010995 [exp]	19.2	0.8630
AT3G01650		RGLG1	RING domain ligase1 (.1)		Lus10017774 [exp]	20.4	0.8530
AT1G34355	FHA	ATPS1	PARALLEL SPINDLE 1, forkhead-a...		Lus10006070 [exp]	24.3	0.8788
AT5G22820			ARM repeat superfamily protein...		Lus10020518 [exp]	25.0	0.7935
AT3G19210		ATRAD54, CHR25	homolog of RAD54 (.1.2)		Lus10019866 [exp]	25.7	0.8788

Compare expression of checked genes

Lus10038148 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.