Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78620 349 / 2e-121 Protein of unknown function DUF92, transmembrane (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005554 [exp] 391 / 5e-138 AT1G78620 410 / 3e-144 Protein of unknown function DUF92, transmembrane (.1.2) Lus10013691 [exp] 387 / 9e-137 AT1G78620 404 / 7e-142 Protein of unknown function DUF92, transmembrane (.1.2) Lus10042501 [exp] 340 / 2e-119 AT1G78620 306 / 3e-105 Protein of unknown function DUF92, transmembrane (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G105700 [exp] 384 / 3e-135 AT1G78620 392 / 7e-137 Protein of unknown function DUF92, transmembrane (.1.2) Potri.001G384300 [exp] 378 / 4e-133 AT1G78620 416 / 1e-146 Protein of unknown function DUF92, transmembrane (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01940 [flax] [poplar] DUF92 Integral membrane protein DUF92
Representative CDS sequence Show only first row Show all	>Lus10038149 pacid=23158441 polypeptide=Lus10038149 locus=Lus10038149.g ID=Lus10038149.BGIv1.0 annot-version=v1.0 ATGGTTCTTCACCCCCCCAATGCAGTATTGATGCAAGGCGTCGTATCTGATGCCATCGGCTTGCTCCAATCTCCTCATCCGACTTGGCAATCCTCCCTCT TCAACAATTTCTTGATTTTCATCCTCGGCTCCCCGATTCTGGTTTCTGGCCTTTCCTTTTCCGGCATCTCAGCCGCCTTCTTGCTTGGAACCCTCATTTG GCGCGCTTTCGGTCCATCTGGATTCCTCCTCGTTGCCTCTTACTTCATCATAGGAACTGGTGTTACCAAAGTGAAAATGTCGCAGAAGGAAGCTCAGGGG ATTGCTGAGAAGAGGAGAGGAAGAAGGGGGCCTGGCAGTCTTGGATTCGTTGCCAGTTTCTGTACCAAGTTGAACGATACTGTCTCCAGTGAGATCGGGA AGGCTTATGGCAAAACTACGTACCTAGTCACAACATTTAAAGTTGTTCCTAGGGGAACAGAAGGGGCTGTGAGCGTTGAGGGAACTTTAGCTGGATTCGT CGCATCAGTCGTGCTTGCTGTGGTTGGTTGTCTCATGGGCCAGATAAATGGAGCTGAAGCAGTGATATGTGTGTTTGCTTCGCAAATAGCGAACTTTGGG GAGAGCGTAATAGGAGCAGTGTTCCAAGAGAAGGAAGGATTCCGCTGGCTTAACAATGATGCAGTAAATGTGATCAACATATCAATTGGGACCATACTGG CAGTTGTATTGAAGCAAGCTTTACTCCAGAACTGGCAAACGTCGTGA
AA sequence Show only first row Show all	>Lus10038149 pacid=23158441 polypeptide=Lus10038149 locus=Lus10038149.g ID=Lus10038149.BGIv1.0 annot-version=v1.0 MVLHPPNAVLMQGVVSDAIGLLQSPHPTWQSSLFNNFLIFILGSPILVSGLSFSGISAAFLLGTLIWRAFGPSGFLLVASYFIIGTGVTKVKMSQKEAQG IAEKRRGRRGPGSLGFVASFCTKLNDTVSSEIGKAYGKTTYLVTTFKVVPRGTEGAVSVEGTLAGFVASVVLAVVGCLMGQINGAEAVICVFASQIANFG ESVIGAVFQEKEGFRWLNNDAVNVINISIGTILAVVLKQALLQNWQTS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G78620			Protein of unknown function DU...		Lus10038149 [exp]	0	1
AT1G67570			Protein of unknown function (D...		Lus10011371 [exp]	1.4	0.7955
AT3G52430		PAD4, ATPAD4	ARABIDOPSIS PHYTOALEXIN DEFICI...		Lus10029534 [exp]	11.0	0.7440
AT2G13100		AtG3Pp5	glycerol-3-phosphate permease ...		Lus10040002 [exp]	11.0	0.7852
AT4G09580			SNARE associated Golgi protein...		Lus10017913 [exp]	13.3	0.7601
AT4G25720		ATQC, QCT	GLUTAMINYL CYCLOTRANSFERASE, A...		Lus10014963 [exp]	13.6	0.7296
AT4G25720		ATQC, QCT	GLUTAMINYL CYCLOTRANSFERASE, A...		Lus10038844 [exp]	14.1	0.6928
AT1G08970	CCAAT	NF-YC9, HAP5C	"nuclear factor Y, subunit C9"...		Lus10004468 [exp]	15.3	0.7909
AT1G14340			RNA-binding (RRM/RBD/RNP motif...		Lus10030491 [exp]	15.9	0.7630
AT1G29690		CAD1	constitutively activated cell ...		Lus10025235 [exp]	20.5	0.7761
AT1G03400			2-oxoglutarate (2OG) and Fe(II...		Lus10007818 [exp]	22.4	0.7396

Compare expression of checked genes

Lus10038149 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.