Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G44820 592 / 0 Peptidase M20/M25/M40 family protein (.1) AT1G44180 571 / 0 Peptidase M20/M25/M40 family protein (.1) AT4G38220 457 / 4e-159 AQI aquaporin interactor, Peptidase M20/M25/M40 family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042502 [exp] 790 / 0 AT1G44820 635 / 0.0 Peptidase M20/M25/M40 family protein (.1) Lus10026565 [exp] 484 / 6e-169 AT4G38220 616 / 0.0 aquaporin interactor, Peptidase M20/M25/M40 family protein (.1.2) Lus10013848 [exp] 456 / 3e-157 AT4G38220 576 / 0.0 aquaporin interactor, Peptidase M20/M25/M40 family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G085400 [exp] 645 / 0 AT1G44820 660 / 0.0 Peptidase M20/M25/M40 family protein (.1) Potri.002G085500 [exp] 641 / 0 AT1G44820 636 / 0.0 Peptidase M20/M25/M40 family protein (.1) Potri.009G169300 [exp] 482 / 2e-168 AT4G38220 646 / 0.0 aquaporin interactor, Peptidase M20/M25/M40 family protein (.1.2) Potri.004G208100 [exp] 464 / 3e-161 AT4G38220 635 / 0.0 aquaporin interactor, Peptidase M20/M25/M40 family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07687 [flax] [poplar] M20_dimer Peptidase dimerisation domain CL0035 [flax] [poplar] Peptidase_MH PF01546 [flax] [poplar] Peptidase_M20 Peptidase family M20/M25/M40
Representative CDS sequence Show only first row Show all	>Lus10038151 pacid=23158454 polypeptide=Lus10038151 locus=Lus10038151.g ID=Lus10038151.BGIv1.0 annot-version=v1.0 ATGATGATGATGATGATCTATCAACTTCTCTTCTTAACTTTCATAATCTCTTCTTCCACCGCCACCATCTCCGGATCTCCAGACAACATCCTCCACCACG GAAGCACTCCAGTGACCCGTTTTCAGCAGTACCTAAGATTCAAAACTGCTCATCCCAACCCAAACTACACAGCTCCCGTCTCTTTCCTCACTTCGATCGC CCACTCCCTCAATCTCAAAACCCAAACCCACGAGTTCGTAGCAGATAAGCCAGTCCTCGTCGTAACCTGGACGGGCTCCAACCCATCTCTCCCTTCCATA CTACTAAACTCTCACCTCGATTCCGTCCCAGCAGAGCCTTCCAAATGGACCCACCCGCCTTTCTCCGCCGTCCGCGACCAGGACGGTAGGATCTTTGCCC GCGGAGCTCAGGACGACAAGTGCATAGCCATCCAGTACTTGGAAGCCATCCGTAACTTGATTCGTGACGGGTTTGTGCCTGCCCGTACTGTCCACATCTC CTATGTCCCCGACGAGGAGATTGGTGGTCAAGATGGAGCGGAGAAGTTTGTTTCATCCAAGGTGTTCGATGAATTGCGAGTTGGGTTTATGTTGGATGAG GGGCAGGCTTCGGTGAACGATGAGTTCAGGGTTTTTTATGGTGATAGGTGTCCATGGAAGATGATTATCAAGGCTAGTGGGCAGCCCGGTCATGGGTCAA GATTGTATGATAATGGGGCGATGGAGAATCTGATGAAGAGCGTTGAGGTTATTAGTAGGTTCCGTGAAGGTCAGTTTGATGCTGTTAAGGCTGGGGAAGC TGCCCACTCTGAGGTTATCTCAGTTAATCCTGTTTATTTGAAAGCTGGGATTCCTTCCCTAACTGGATTTGTAATGAATATGCAGCCTTCGGAGGCAGAA GCCGGGTATGATATTAGGATGCCTCCTTCTGCAGACCCTGATCTTATGAAGAAAAGAATTGCTCAAGAGTGGGCTCCAGCAGTCCGCAACTTGACATTTA AGAGGAATCTCAAACATCTGACACCATCTGCTGTTGGTAACCCTTTGCAATCAAAAAAGTTGGTGGGTTTTGCTTCATCAGATGAACTTGATAAGATACA GGCGCAAGGACCTATAAGGGATCTGAATGGGAACCCATTAGTGACCGCAACTGATGATTCTAATCCATGGTGGTCTGTATTTAAGCAAGCCATCGCTGCA GCTGGAGGAAAGCTGGCGAAACCTGAAATACTGGGTTCAACTACTGATGCAAGGTATGTGAGGCAGTTAGGAATTCCTGCATTGGGTTTCTCGCCAATGA CAAATACTCCCATATTGCTCCACGACCATAATGAGTTTCTGAAAGATAGCGTGTTCTTGAAGGGTATTGAGGTGTACGAGCACTTAATTAGGTCTCTGAG CTCGTTCGAGACGATCAATGAGTTGTAG
AA sequence Show only first row Show all	>Lus10038151 pacid=23158454 polypeptide=Lus10038151 locus=Lus10038151.g ID=Lus10038151.BGIv1.0 annot-version=v1.0 MMMMMIYQLLFLTFIISSSTATISGSPDNILHHGSTPVTRFQQYLRFKTAHPNPNYTAPVSFLTSIAHSLNLKTQTHEFVADKPVLVVTWTGSNPSLPSI LLNSHLDSVPAEPSKWTHPPFSAVRDQDGRIFARGAQDDKCIAIQYLEAIRNLIRDGFVPARTVHISYVPDEEIGGQDGAEKFVSSKVFDELRVGFMLDE GQASVNDEFRVFYGDRCPWKMIIKASGQPGHGSRLYDNGAMENLMKSVEVISRFREGQFDAVKAGEAAHSEVISVNPVYLKAGIPSLTGFVMNMQPSEAE AGYDIRMPPSADPDLMKKRIAQEWAPAVRNLTFKRNLKHLTPSAVGNPLQSKKLVGFASSDELDKIQAQGPIRDLNGNPLVTATDDSNPWWSVFKQAIAA AGGKLAKPEILGSTTDARYVRQLGIPALGFSPMTNTPILLHDHNEFLKDSVFLKGIEVYEHLIRSLSSFETINEL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G44820			Peptidase M20/M25/M40 family p...		Lus10038151 [exp]	0	1
AT1G45688			unknown protein		Lus10025793 [exp]	4.1	0.8641
AT3G02720			Class I glutamine amidotransfe...		Lus10031360 [exp]	7.5	0.8042
AT3G07360		ATPUB9	ARABIDOPSIS THALIANA PLANT U-B...		Lus10025885 [exp]	10.2	0.8276
AT1G70230		AXY4, TBL27	ALTERED XYLOGLUCAN 4, TRICHOME...		Lus10029188 [exp]	22.0	0.7853
AT1G67350			unknown protein		Lus10037020 [exp]	25.7	0.7992
AT5G51010			Rubredoxin-like superfamily pr...		Lus10022430 [exp]	27.7	0.7552
AT5G16550			unknown protein		Lus10002085 [exp]	30.2	0.7982
AT1G26690			emp24/gp25L/p24 family/GOLD fa...		Lus10030436 [exp]	31.0	0.7964
AT5G64020		TBL14	TRICHOME BIREFRINGENCE-LIKE 14...		Lus10037877 [exp]	32.5	0.7836
AT4G29340		PRF4	profilin 4 (.1)		Lus10034988 [exp]	33.4	0.7962

Compare expression of checked genes

Lus10038151 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.