Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08390 155 / 8e-50 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042503 [exp] 276 / 2e-97 AT1G08390 156 / 5e-50 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G190200 [exp] 188 / 1e-62 AT1G08390 158 / 9e-51 unknown protein Potri.002G256001 [exp] 77 / 8e-19 AT1G08390 0 / 1 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10038152 pacid=23158143 polypeptide=Lus10038152 locus=Lus10038152.g ID=Lus10038152.BGIv1.0 annot-version=v1.0 ATGGATTACAGTCTCGCGGCACTGAAGCTTCTTAACTTCCAACTCAAAGACGCTCGCGAGAGTTCTAAACCCAAACTCCCCACTCTAGGTGCCATCCTCT TCCAGCGCGCTTGGTTACAGGGATTTATAGTCTCCAACTGCGGCGACAATCGTCTGCTTCTTGACGACGGCACTGGCGTCATCCAGCTTCTCGTCACCGG CGATTTCAGGCGCCGCAAGTGGGATGTTGGGCTTTATGTAATGGTAATAGGAGCCTATGCTCTCCCTACGGAGACGAATCCACCCTTTATCAAGGTTCAT AAGATGGTGGATCTCTCACCATTTCCGGACAGAGAAGCCATGTGGTTGCTGGAAGTGCTGGAGGCGTATAAGCTGTTCTACCAGCCACTCATTGAAGACT GCATGTGA
AA sequence Show only first row Show all	>Lus10038152 pacid=23158143 polypeptide=Lus10038152 locus=Lus10038152.g ID=Lus10038152.BGIv1.0 annot-version=v1.0 MDYSLAALKLLNFQLKDARESSKPKLPTLGAILFQRAWLQGFIVSNCGDNRLLLDDGTGVIQLLVTGDFRRRKWDVGLYVMVIGAYALPTETNPPFIKVH KMVDLSPFPDREAMWLLEVLEAYKLFYQPLIEDCM

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G08390			unknown protein		Lus10038152 [exp]	0	1
AT4G00525			unknown protein		Lus10030386 [exp]	3.2	0.8198
AT3G18165		MOS4	modifier of snc1,4 (.1)		Lus10018001 [exp]	3.5	0.8145
AT1G03150			Acyl-CoA N-acyltransferases (N...		Lus10022048 [exp]	6.0	0.7957
AT2G07715			Nucleic acid-binding, OB-fold-...		Lus10037433 [exp]	6.9	0.7646
AT3G18165		MOS4	modifier of snc1,4 (.1)		Lus10041997 [exp]	7.3	0.8003
AT1G12230			Aldolase superfamily protein (...		Lus10032243 [exp]	7.4	0.7582
					Lus10018814 [exp]	12.6	0.7838
AT4G18100			Ribosomal protein L32e (.1)		Lus10031699 [exp]	15.9	0.7720
AT4G02580			NADH-ubiquinone oxidoreductase...		Lus10002721 [exp]	15.9	0.7651
AT1G51510		Y14	RNA-binding (RRM/RBD/RNP motif...		Lus10003632 [exp]	19.7	0.7561

Compare expression of checked genes

Lus10038152 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.