Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G53440 1034 / 0 Leucine-rich repeat transmembrane protein kinase (.1) AT1G53430 1020 / 0 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G07650 815 / 0 Leucine-rich repeat transmembrane protein kinase (.1.2) AT3G14840 800 / 0 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G53420 757 / 0 Leucine-rich repeat transmembrane protein kinase (.1) AT1G29750 689 / 0 RKF1 receptor-like kinase in flowers 1 (.1.2) AT1G29730 686 / 0 Leucine-rich repeat transmembrane protein kinase (.1) AT1G29740 684 / 0 Leucine-rich repeat transmembrane protein kinase (.1) AT1G29720 671 / 0 Leucine-rich repeat transmembrane protein kinase (.1) AT1G56145 666 / 0 Leucine-rich repeat transmembrane protein kinase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042505 [exp] 1458 / 0 AT1G53440 1013 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10005550 [exp] 1186 / 0 AT1G53440 1223 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10041937 [exp] 1082 / 0 AT1G53440 1138 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10031374 [exp] 787 / 0 AT1G07650 1221 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2) Lus10015239 [exp] 751 / 0 AT1G29750 1189 / 0.0 receptor-like kinase in flowers 1 (.1.2) Lus10010951 [exp] 647 / 0 AT1G07650 979 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2) Lus10031199 [exp] 643 / 0 AT1G56130 1261 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10005418 [exp] 547 / 0 AT1G29750 800 / 0.0 receptor-like kinase in flowers 1 (.1.2) Lus10026207 [exp] 316 / 7e-98 AT1G16670 541 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G106400 [exp] 1124 / 0 AT1G53440 1268 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.001G385400 [exp] 1120 / 0 AT1G53440 1231 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.003G026325 [exp] 1109 / 0 AT1G53440 1195 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.001G385300 [exp] 1102 / 0 AT1G53440 1134 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.001G386300 [exp] 1100 / 0 AT1G53440 1120 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.001G385600 [exp] 1099 / 0 AT1G53440 1202 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.004G135500 [exp] 882 / 0 AT1G07650 1324 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2) Potri.001G385200 [exp] 878 / 0 AT3G14840 1171 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2) Potri.003G025800 [exp] 860 / 0 AT1G53440 1010 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.011G072566 [exp] 780 / 0 AT1G29750 1210 / 0.0 receptor-like kinase in flowers 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0202 [flax] [poplar] GBD PF11721 [flax] [poplar] Malectin Malectin domain CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10038153 pacid=23158108 polypeptide=Lus10038153 locus=Lus10038153.g ID=Lus10038153.BGIv1.0 annot-version=v1.0 ATGGCCTTTTCTGGCGTGCTGGAGAGGGCAGCCTCCCTTGGTTTGGCGGCCATGGTGGCGCTGAGTTGTCTGTCCGTGCTAGTGGACTTCCGATCTCGTG CTCAAGTAGTACACCAACCGGTGCCACTCCTTCCAGTTGAAGAAGTTGCTTTCTTGTCTGGGACAACCCTGATCGATGCAGTTGAAACACTGATAGCCAT ATCCAGCAAGCTCCATGCTGAGGATTGGCAAGTGAGCAAAAGTTCATGTGGCAGCCCAGCTTGGAATCGCAGCATCCAGCCTAAGCCCTTAGAAATTCGG AGGCTTATTACGTGCAACTGTTCTTTTGGCAGTGGCACCATTTGTCACGTCACCAACATTTCGGTGAAGGGTTACAATTTAACAGGTATTCTACCACCTG AACTCGGCAATCTTACTCAGCTGAACGAGTTGGATCTTACTCGCAACTACATCAGTGGCCCCATCCCTCCAAGTCTTGCACAACTTACCAACCTAGCAAA ATTGTCTCTTCTGGGAAACCGACTAAGTGGGACTATCCCCCTGGAGATTGGCCACATTACTACTCTTCAAGAACTGGTATTGGAGGATAACTTATTACAA GGACCTCTTCCGCCAAGCCTGGGAAACCTTAAAAGCTTGGAAATACTTATTCTTTCTGCAAACAATTTTACGGGTTCTATACCAGACAGCTTTGCCAATT TAAGGAACATTACTTCATTTCGGATTGATGGGAGCACTTTGGCCGGAAAGCTGCCTGAATTTATAGGAAATTGGACCAATCTTAAAGAACTATATTTGCA GGGCACATCGATGCAGGGTCCTATTCCTTCGACAGTATCAATGTTGTACAACTTGACGGACCTACTTGGCGGTCCAACTTCTGTTTTCCCTAATCTTAAG GACCTGACAAAGATCAGAACACTGGTGCTGAGGAACTGCTTGCTTAATGGTTCAATCCCAGATTATATTGGAAAGGCAGCCCGTTTGAAAACCTTGGATT TGAGTTTCAACAGCTTAACAGGTATAATACCAGACATGGGTGATTTAGATGATCTGCAATTCATGTTTCTGAACAATAATTCATTGACTGGACAAGTACC GTCCTGGATACTGAGCAAAAATGGGAACTTTGACTTATCGTACAACAATTATACGGGGATACCTCCTCAGAGAGACTGTTTACAAGTCCGTGTGAACCTG ATTTCTAGTTATTCACCTGTTAGCAACTCCGCACCTTGGTGCTTCCAAAAGGACCTTCCTTGCAATGAGAATAATATCCATAGGACCGAAACAAGCTTTG GAAATAAAACATATGAGGCAGACCAATATGTTGACGGGAGATCAACCTTTTATCCAGTAACAGGAAAATGGGGTTATAGTAGTACTGGAGTCTACATGGA AAATGAGGGTGCTGATTATGTAGCACGCGATACTTCTAAGCACAATAAGACTGCAGATATCTATGAAACTGCACGCGGAGCTCCCCAATCACTCAAGTAC TATGGCTTTTGCATGCGGAAAGGAATTTACAATGTTACTCTCCATTTTGCTGAGATCAAGTTCTCCAATGATGAGACTTTTGCTAGTCTTGGACGCCGCA TATTTGATATATCAATTCAAGGGAAGATTGTCCGCCGAGATTTTGACATCGTAAAAAAAGCTGGAGGAGTTCAAATTGGAACCACGGAAGTATTTGACAA TGTAATTGTCAATGGTACCACTTTGGAGATACACTTGTACTGGTCTGGGAAAGGAACCACTGCCATTCCTAAGAAAGGTGTTTATGGACCTCTCATTTCC GGAATTTCTGTGACCCTAAAATCTCGGTTTCCTGATGCAAGCAGCGGATCAATAGGTGGTGTCACTCGAGAAAATAGTGGATTATCCGTAGGTCTCATTG CTGGCATCGTAGTTTCTTCGTTTGTGGTTCTTCTGGTTCTTTGTTTTTCCATCTTCATGATTTGGAGAAGAAAAGATGACAGGGATCCTGAGCTTCGTGG ACTCGATCTTCAGACTGGCTGTTTCACGTTAAGACAGATCAAACTTGCTACTAATAACTTTAATTCTGCAAATAAGATTGGAGAAGGAGGGTTTGGCCCG GTCTACAAGGGTATCCTCTCAAATGTCGGTGTAGTTGCAGTGAAGCAACTATCGGCCAAATCAATGCAGGGGAACCGTGAATTTGTGAATGAAATAGGAA TGATTTCTGCACTGCAGCATCCCAATCTTGTCAAACTTTTCGGATGTTGCATGGAAGGAAATCAGCTTTTGCTAGTGTATGAATACTTGGAAAACAACAG CCTGGCCCGTGCAATATTTGGTACTGAGGAACAAACGCTGCGGCTGGACTGGCAAACAAGGAAAAACATATTGTTGGGAGTTGCAAAGGGATTGACTTAC CTTCACGAGGAATCGAGGTTGAAAATCGTGCACAGAGATATAAAAGCGACTAATGTTCTGCTTGATAAGGATCTCAATGCCAAGATTTCTGACTTTGGTT TGGCAAAGCTGCACGAGGAAGAGGAAAGCCACATTAGCACAAGAATTGCTATTTTCTTTTTATTTGGTTATCTGTACAGAGGATATATGGCTCCCGAGTA TGCAACGAGGGGTTACTTGACAGACAAGGCAGATGTGTACAGCTTTGGCATCGTAATTCTAGAGACCGTCAGTGGAAGGAGTAATACAAGTTATAGGCTA AAAGGGGAAAATGTCTACCTTGTTGATTGGGCCTATATGCTGAAAGAGCAAGGAGACCTTCTCGAGCTGGTTGATCCAACGCTGAGCTCAGGCTCCTACT TGAAAGAAGAAGTCGAGAAGATGCTCAACTTGTCTCTGTTGTGCGCTAACCCATCTCACACTTTGAGGCCGTTGATGTCTTCTGTTGTGGACATGATAGA AGGCAAAGCTCCTGTACAAGCTCCCATCATCCAGCAGGGAGGAAGTGAGTTTGCCAGTGGCCAACAAAGTGCGAGTTTCAGGGCGCTCCAGAAAACGACA CTGCAGGATAGCTACAACACCAACGTCTCATGGGAGAGTAACGATCAAGTTCGGCAAAGCATTTCCACGGATGATGTACCGTTGGATTCATCATCTTCCA TAATAAGCAAGGTTGACCATGCTAATGACGATGATGACGACGACGACCATGATGATATCGTTCCACTTTCCTCTTCCGGCAGACATTTGTAA
AA sequence Show only first row Show all	>Lus10038153 pacid=23158108 polypeptide=Lus10038153 locus=Lus10038153.g ID=Lus10038153.BGIv1.0 annot-version=v1.0 MAFSGVLERAASLGLAAMVALSCLSVLVDFRSRAQVVHQPVPLLPVEEVAFLSGTTLIDAVETLIAISSKLHAEDWQVSKSSCGSPAWNRSIQPKPLEIR RLITCNCSFGSGTICHVTNISVKGYNLTGILPPELGNLTQLNELDLTRNYISGPIPPSLAQLTNLAKLSLLGNRLSGTIPLEIGHITTLQELVLEDNLLQ GPLPPSLGNLKSLEILILSANNFTGSIPDSFANLRNITSFRIDGSTLAGKLPEFIGNWTNLKELYLQGTSMQGPIPSTVSMLYNLTDLLGGPTSVFPNLK DLTKIRTLVLRNCLLNGSIPDYIGKAARLKTLDLSFNSLTGIIPDMGDLDDLQFMFLNNNSLTGQVPSWILSKNGNFDLSYNNYTGIPPQRDCLQVRVNL ISSYSPVSNSAPWCFQKDLPCNENNIHRTETSFGNKTYEADQYVDGRSTFYPVTGKWGYSSTGVYMENEGADYVARDTSKHNKTADIYETARGAPQSLKY YGFCMRKGIYNVTLHFAEIKFSNDETFASLGRRIFDISIQGKIVRRDFDIVKKAGGVQIGTTEVFDNVIVNGTTLEIHLYWSGKGTTAIPKKGVYGPLIS GISVTLKSRFPDASSGSIGGVTRENSGLSVGLIAGIVVSSFVVLLVLCFSIFMIWRRKDDRDPELRGLDLQTGCFTLRQIKLATNNFNSANKIGEGGFGP VYKGILSNVGVVAVKQLSAKSMQGNREFVNEIGMISALQHPNLVKLFGCCMEGNQLLLVYEYLENNSLARAIFGTEEQTLRLDWQTRKNILLGVAKGLTY LHEESRLKIVHRDIKATNVLLDKDLNAKISDFGLAKLHEEEESHISTRIAIFFLFGYLYRGYMAPEYATRGYLTDKADVYSFGIVILETVSGRSNTSYRL KGENVYLVDWAYMLKEQGDLLELVDPTLSSGSYLKEEVEKMLNLSLLCANPSHTLRPLMSSVVDMIEGKAPVQAPIIQQGGSEFASGQQSASFRALQKTT LQDSYNTNVSWESNDQVRQSISTDDVPLDSSSSIISKVDHANDDDDDDDHDDIVPLSSSGRHL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G53440			Leucine-rich repeat transmembr...		Lus10038153 [exp]	0	1
AT1G53440			Leucine-rich repeat transmembr...		Lus10042505 [exp]	1.4	0.9039
AT2G04842		EMB2761	EMBRYO DEFECTIVE 2761, threony...		Lus10012360 [exp]	2.4	0.8983
					Lus10030151 [exp]	2.8	0.9021
AT4G15440		CYP74B2, HPL1	hydroperoxide lyase 1 (.1)		Lus10031540 [exp]	6.0	0.8968
AT4G12320		CYP706A6	"cytochrome P450, family 706, ...		Lus10032217 [exp]	8.4	0.8822
AT3G27810	MYB	AtMYB3, ATMYB21	ARABIDOPSIS THALIANA MYB DOMA...		Lus10013081 [exp]	9.5	0.8269
AT1G25270			nodulin MtN21 /EamA-like trans...		Lus10012693 [exp]	10.4	0.8758
AT4G35270		NLP2	Plant regulator RWP-RK family ...		Lus10023930 [exp]	14.1	0.8580
AT4G37470			alpha/beta-Hydrolases superfam...		Lus10037651 [exp]	14.8	0.8106
AT5G20140			SOUL heme-binding family prote...		Lus10013345 [exp]	15.7	0.8962

Compare expression of checked genes

Lus10038153 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.