Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042506 [exp] 121 / 7e-36 AT4G16295 112 / 5e-32 S-protein homologue 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G252500 [exp] 44 / 5e-06 AT4G16295 116 / 9e-34 S-protein homologue 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10038154 pacid=23158321 polypeptide=Lus10038154 locus=Lus10038154.g ID=Lus10038154.BGIv1.0 annot-version=v1.0 ATGACCACCGAACAGGTCTGTATCCGGGACTATACTTCTCAGCGCCTTCTTGGCTTCTTCCAAACCACACACATATTACTCAATGCTTCAAGAGATCTTT GCTTAAGGGTCAGCATTGCTTCACGGAAGGGTGTAACGGAGCTCGTCGACGTTACCGATTTTATCCAAACCCCGGATATAAACACCGTCGTCTTTCGCAA TCCAAATGCACTTGCTCCACCCGCACTTGTAGAGCAACAACACGTCATGCCAGAACACTTTGAACGCCGCTTCCCCCCGCGACGTCGTTTGATCACGTGC GTAGCACCAGAAGAGCGTCCTTCCAAACAAGTTCTCTCGGAAACCCCACGTGGAGTTCAACCCAACCGACAGATTCTTCAACCCCAGATCGTCGTCCTTG GATTGGCAGTGTAG
AA sequence Show only first row Show all	>Lus10038154 pacid=23158321 polypeptide=Lus10038154 locus=Lus10038154.g ID=Lus10038154.BGIv1.0 annot-version=v1.0 MTTEQVCIRDYTSQRLLGFFQTTHILLNASRDLCLRVSIASRKGVTELVDVTDFIQTPDINTVVFRNPNALAPPALVEQQHVMPEHFERRFPPRRRLITC VAPEERPSKQVLSETPRGVQPNRQILQPQIVVLGLAV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10038154 [exp]	0	1
AT4G29035			Plant self-incompatibility pro...		Lus10022825 [exp]	1.0	0.9806
AT1G73110			P-loop containing nucleoside t...		Lus10024092 [exp]	1.4	0.9763
AT2G30900		TBL43	TRICHOME BIREFRINGENCE-LIKE 43...		Lus10007367 [exp]	1.7	0.9576
AT4G18770	MYB	ATMYB98	myb domain protein 98 (.1)		Lus10042111 [exp]	4.0	0.9461
AT2G45650	MADS	AGL6	AGAMOUS-like 6 (.1)		Lus10015017 [exp]	7.1	0.9368
AT3G05610			Plant invertase/pectin methyle...		Lus10020909 [exp]	8.7	0.9054
					Lus10017869 [exp]	9.2	0.9312
AT1G69120	MADS	AGL7, AP1	APETALA1, AGAMOUS-like 7, K-bo...		Lus10017871 [exp]	10.0	0.9018
AT2G04570			GDSL-like Lipase/Acylhydrolase...		Lus10015162 [exp]	10.2	0.9245
					Lus10016041 [exp]	10.4	0.9175

Compare expression of checked genes

Lus10038154 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.