Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13230 53 / 8e-10 Late embryogenesis abundant protein (LEA) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042508 [exp] 204 / 6e-69 AT4G13230 52 / 2e-09 Late embryogenesis abundant protein (LEA) family protein (.1) Lus10011889 [exp] 129 / 3e-39 AT4G13230 65 / 2e-14 Late embryogenesis abundant protein (LEA) family protein (.1) Lus10022822 [exp] 125 / 1e-37 AT4G13230 59 / 6e-12 Late embryogenesis abundant protein (LEA) family protein (.1) Lus10014004 [exp] 42 / 4e-05 AT4G21020 99 / 2e-24 Late embryogenesis abundant protein (LEA) family protein (.1) Lus10015427 [exp] 42 / 5e-05 AT4G21020 99 / 1e-24 Late embryogenesis abundant protein (LEA) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G252100 [exp] 85 / 1e-21 AT4G13230 76 / 1e-18 Late embryogenesis abundant protein (LEA) family protein (.1) Potri.011G054200 [exp] 49 / 1e-07 AT4G21020 96 / 1e-23 Late embryogenesis abundant protein (LEA) family protein (.1) Potri.004G046000 [exp] 47 / 5e-07 AT4G21020 64 / 4e-12 Late embryogenesis abundant protein (LEA) family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10038156 pacid=23158140 polypeptide=Lus10038156 locus=Lus10038156.g ID=Lus10038156.BGIv1.0 annot-version=v1.0 ATGGCAACCCAAGCTTTGATCAGGAGAACCTCCAGGGCTGCTTTCCTCTCTAGGCATATTCAGACAAGTGCACGTAGAGATGCGGCCTCCTCGTTGGATG CGGCAAAGAAGGGAGCCGAAGGGGCAAAGAAAGTCGGAGAGGACATGAAAGGCAAAGCTGAATGTGCCGCCGGAGATATGTCTCAGAAGGGAAAGGACAT GGCGGGAGAGGCGGCGAACATGGCTCAGAATGTGACGGAGAAGGCAAAGCAGACAGTGCAAGGAGCATGGGGGACGATGAAGGACACGACACAGAAGATC AAAGACAGTGTAATGCACAAGGCCGGAGAGTCTAAGGATTGTGTGAAGGAGAACGCCGACGCTGTCAAAAGCAGCATGAACTCCAAGAAGTCTGATCTAT CCTAA
AA sequence Show only first row Show all	>Lus10038156 pacid=23158140 polypeptide=Lus10038156 locus=Lus10038156.g ID=Lus10038156.BGIv1.0 annot-version=v1.0 MATQALIRRTSRAAFLSRHIQTSARRDAASSLDAAKKGAEGAKKVGEDMKGKAECAAGDMSQKGKDMAGEAANMAQNVTEKAKQTVQGAWGTMKDTTQKI KDSVMHKAGESKDCVKENADAVKSSMNSKKSDLS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G13230			Late embryogenesis abundant pr...		Lus10038156 [exp]	0	1
AT5G62420			NAD(P)-linked oxidoreductase s...		Lus10031162 [exp]	2.4	0.8407
					Lus10016514 [exp]	2.4	0.7879
AT2G44840	AP2_ERF	ATERF13, EREBP	ethylene-responsive element bi...		Lus10016211 [exp]	2.4	0.8475
AT5G62420			NAD(P)-linked oxidoreductase s...		Lus10031739 [exp]	4.6	0.8342
					Lus10009363 [exp]	10.2	0.7382
AT4G17905		ATL4H	RING/U-box superfamily protein...		Lus10024405 [exp]	11.8	0.7479
AT3G54140		ATPTR1	ARABIDOPSIS THALIANA PEPTIDE T...		Lus10006125 [exp]	14.9	0.6878
AT4G27300			S-locus lectin protein kinase ...		Lus10037865 [exp]	18.0	0.7247
AT5G66430			S-adenosyl-L-methionine-depend...		Lus10024671 [exp]	26.5	0.7284
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10026237 [exp]	34.9	0.7456

Compare expression of checked genes

Lus10038156 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.