Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13710 653 / 0 Pectin lyase-like superfamily protein (.1.2) AT3G24670 649 / 0 Pectin lyase-like superfamily protein (.1) AT3G07010 637 / 0 Pectin lyase-like superfamily protein (.1) AT1G04680 637 / 0 Pectin lyase-like superfamily protein (.1) AT5G48900 619 / 0 Pectin lyase-like superfamily protein (.1) AT4G13210 611 / 0 Pectin lyase-like superfamily protein (.1.2) AT3G24230 580 / 0 Pectate lyase family protein (.1) AT1G67750 578 / 0 Pectate lyase family protein (.1) AT4G24780 574 / 0 Pectin lyase-like superfamily protein (.1.2) AT5G63180 569 / 0 Pectin lyase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011885 [exp] 713 / 0 AT3G07010 674 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10022817 [exp] 712 / 0 AT3G24670 673 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10023679 [exp] 677 / 0 AT4G13710 729 / 0.0 Pectin lyase-like superfamily protein (.1.2) Lus10011758 [exp] 657 / 0 AT4G13710 703 / 0.0 Pectin lyase-like superfamily protein (.1.2) Lus10011400 [exp] 564 / 0 AT1G67750 623 / 0.0 Pectate lyase family protein (.1) Lus10006456 [exp] 564 / 0 AT1G67750 625 / 0.0 Pectate lyase family protein (.1) Lus10036946 [exp] 551 / 0 AT5G63180 627 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10033037 [exp] 542 / 0 AT5G63180 671 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10022310 [exp] 528 / 0 AT5G63180 626 / 0.0 Pectin lyase-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G178100 [exp] 683 / 0 AT3G07010 652 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.002G238800 [exp] 679 / 0 AT3G07010 655 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.001G052300 [exp] 676 / 0 AT4G13710 696 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.003G175900 [exp] 660 / 0 AT4G13710 681 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.015G087800 [exp] 578 / 0 AT5G63180 657 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.012G091500 [exp] 573 / 0 AT4G24780 645 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.008G182200 [exp] 555 / 0 AT1G67750 671 / 0.0 Pectate lyase family protein (.1) Potri.001G339500 [exp] 550 / 0 AT4G24780 617 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.010G051800 [exp] 549 / 0 AT1G67750 645 / 0.0 Pectate lyase family protein (.1) Potri.006G122000 [exp] 493 / 7e-173 AT3G53190 647 / 0.0 Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF00544 [flax] [poplar] Pectate_lyase_4 Pectate lyase
Representative CDS sequence Show only first row Show all	>Lus10038157 pacid=23158179 polypeptide=Lus10038157 locus=Lus10038157.g ID=Lus10038157.BGIv1.0 annot-version=v1.0 ATGGCGGATTCATCTCGTTGGATTCCAGTAGCTGCATTGGTAGGTTTGCTTATGTTAGTTGCGGCAGCAGCCACAGCCGACGATCTGAATTCGAGGAAGG AGAAATCACTGGAGCTGATGGTTCAGAGATGGGAGGAGAAGAATTCTTCAGTTCCCAGTAACAGGATGGAGGAGGGTGAGATGGTAAATGAGCATGCAGT GGATAACCCGGAGGAGATTGCTGAAATGGTGAATGAGAGTATTATGAATAGTACCGCAAGAAGGAAACTAGGATTCTTCTCATGTTCGACGGGCAACCCA ATCGACGACTGCTGGCGGTGTGACCCACACTGGCAGACTCACCGAAAACGGTTAGCCGACTGCGCAATCGGCTTCGGCCGCAACGCAATCGGCGGCCGCG ACGGGAGGTACTACGTGGTCACGGATCCCCGCGACGACGACGCAGTCAACCCGAGACCCGGGACGCTCCGGCACGCGGTGATACAGGACAGGCCGCTGTG GATAGTGTTCAAAAGGGACATGGTGATCACGTTGAGACAAGAGCTGATCATGAACAGCTTCAAGACCATAGACGGCAGGGGAGCTAATGTCCATATTGCC AATGGGGGATGCATCACAATCCAATTCGTGACAAACATTATAATACACGGGCTCAACATCCACGATTGCAAGCCTACCGGGAACGCCATGGTGCGGAGCT CTCCGGGGCATTATGGATGGAGGACGATGGCTGATGGAGATGGGGTTTCCATATTTGATTCGAGCCATATTTGGGTAGACCACAACTCTCTGTCCAACTG CGCCGATGGTCTCATTGATGCCATTATGGGATCTACTGCTATTACCATTTCCAACAACTTCTTTACCCACCATAATGAGGTTATTCTATTGGGACATAGT GACTCGTACGTCAGGGACAAGCAAATGCAGGTGACTATTGCGTACAATCACTTTGGTGAAGGACTTGTCCAGAGGATGCCAAGGTGTCGGCACGGATACT TCCATGTGGTGAACAACGACTACACACACTGGGAAATGTATGCAATCGGAGGAAGTGCGAATCCCACCATTAACAGCCAAGGCAATAGATACCTTGCCCC GAACAACCCTTTTGCCAAGGAGGTGACGAAGAGAGTGGAAACGAACAATGGAGTGTGGAAGAGCTGGAACTGGAGGTCAGAAGGGGATCTGCTACTGAAT GGGGCTTACTTCAAACCATCAGGAGCAGGAGCAGGAGCCAGCTACGCGAGGGCTTCAAGCTTAGGAGCAAAGCCCTCTTCTTTGGTTGGGATGATCACTT CCACTTCTGGTGCATTGGTCTGCCGCAGGGGCCGCTCCTGTTGA
AA sequence Show only first row Show all	>Lus10038157 pacid=23158179 polypeptide=Lus10038157 locus=Lus10038157.g ID=Lus10038157.BGIv1.0 annot-version=v1.0 MADSSRWIPVAALVGLLMLVAAAATADDLNSRKEKSLELMVQRWEEKNSSVPSNRMEEGEMVNEHAVDNPEEIAEMVNESIMNSTARRKLGFFSCSTGNP IDDCWRCDPHWQTHRKRLADCAIGFGRNAIGGRDGRYYVVTDPRDDDAVNPRPGTLRHAVIQDRPLWIVFKRDMVITLRQELIMNSFKTIDGRGANVHIA NGGCITIQFVTNIIIHGLNIHDCKPTGNAMVRSSPGHYGWRTMADGDGVSIFDSSHIWVDHNSLSNCADGLIDAIMGSTAITISNNFFTHHNEVILLGHS DSYVRDKQMQVTIAYNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYLAPNNPFAKEVTKRVETNNGVWKSWNWRSEGDLLLN GAYFKPSGAGAGASYARASSLGAKPSSLVGMITSTSGALVCRRGRSC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G13710			Pectin lyase-like superfamily ...		Lus10038157 [exp]	0	1
AT1G24430			HXXXD-type acyl-transferase fa...		Lus10028813 [exp]	1.7	0.7946
AT1G63930		ROH1	from the Czech 'roh' meaning '...		Lus10028764 [exp]	30.7	0.7841
AT4G33550			Bifunctional inhibitor/lipid-t...		Lus10019029 [exp]	44.0	0.7761
AT3G56850	bZIP	DPBF3, AREB3	ABA-responsive element binding...		Lus10028888 [exp]	56.9	0.7717
AT3G63130		ATRANGAP1, RANG...	RAN GTPASE-ACTIVATING PROTEIN ...		Lus10014670 [exp]	58.2	0.7492
AT3G24860	Trihelix		Homeodomain-like superfamily p...		Lus10022789 [exp]	61.7	0.7028
AT4G11950			Protein of unknown function (D...		Lus10006712 [exp]	64.7	0.7596
AT4G32400		EMB42, EMB104, ...	SODIUM HYPERSENSITIVE 1, EMBRY...		Lus10002902 [exp]	68.1	0.6647
AT4G13710			Pectin lyase-like superfamily ...		Lus10042509 [exp]	83.1	0.6848
AT1G09790		COBL6	COBRA-like protein 6 precursor...		Lus10016188 [exp]	132.3	0.6507

Compare expression of checked genes

Lus10038157 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.