Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G25140 325 / 8e-106 CYP71B13 "cytochrome P450, family 71, subfamily B, polypeptide 13", cytochrome P450, family 71, subfamily B, polypeptide 13 (.1) AT3G26300 321 / 4e-104 CYP71B34 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) AT3G26330 319 / 2e-103 CYP71B37 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) AT3G26320 318 / 7e-103 CYP71B36 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1) AT3G26310 316 / 3e-102 CYP71B35 "cytochrome P450, family 71, subfamily B, polypeptide 35", cytochrome P450, family 71, subfamily B, polypeptide 35 (.1) AT5G25120 315 / 5e-102 CYP71B11 "ytochrome p450, family 71, subfamily B, polypeptide 11", ytochrome p450, family 71, subfamily B, polypeptide 11 (.1) AT5G25180 309 / 1e-99 CYP71B14 "cytochrome P450, family 71, subfamily B, polypeptide 14", cytochrome P450, family 71, subfamily B, polypeptide 14 (.1) AT3G26290 308 / 6e-99 CYP71B26 "cytochrome P450, family 71, subfamily B, polypeptide 26", cytochrome P450, family 71, subfamily B, polypeptide 26 (.1) AT5G57260 303 / 4e-97 CYP71B10 "cytochrome P450, family 71, subfamily B, polypeptide 10", cytochrome P450, family 71, subfamily B, polypeptide 10 (.1) AT5G25130 303 / 4e-97 CYP71B12 "cytochrome P450, family 71, subfamily B, polypeptide 12", cytochrome P450, family 71, subfamily B, polypeptide 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016601 [exp] 431 / 8e-147 AT3G26320 402 / 6e-136 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1) Lus10009903 [exp] 411 / 3e-139 AT5G57260 376 / 1e-125 "cytochrome P450, family 71, subfamily B, polypeptide 10", cytochrome P450, family 71, subfamily B, polypeptide 10 (.1) Lus10034230 [exp] 404 / 3e-136 AT1G13110 400 / 9e-135 "cytochrome P450, family 71 subfamily B, polypeptide 7", cytochrome P450, family 71 subfamily B, polypeptide 7 (.1) Lus10029035 [exp] 404 / 8e-136 AT1G13110 402 / 1e-135 "cytochrome P450, family 71 subfamily B, polypeptide 7", cytochrome P450, family 71 subfamily B, polypeptide 7 (.1) Lus10013194 [exp] 402 / 2e-135 AT5G25120 387 / 9e-130 "ytochrome p450, family 71, subfamily B, polypeptide 11", ytochrome p450, family 71, subfamily B, polypeptide 11 (.1) Lus10030708 [exp] 393 / 7e-132 AT3G26210 390 / 6e-131 "cytochrome P450, family 71, subfamily B, polypeptide 23", cytochrome P450, family 71, subfamily B, polypeptide 23 (.1) Lus10030924 [exp] 389 / 3e-130 AT3G26300 391 / 2e-131 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Lus10012879 [exp] 385 / 1e-128 AT3G26330 409 / 6e-138 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) Lus10019157 [exp] 375 / 6e-125 AT3G48300 358 / 1e-118 "cytochrome P450, family 71, subfamily A, polypeptide 23", cytochrome P450, family 71, subfamily A, polypeptide 23 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G130800 [exp] 407 / 1e-137 AT3G26300 359 / 4e-119 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.011G130850 [exp] 405 / 9e-137 AT3G26300 361 / 5e-120 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G074900 [exp] 396 / 2e-133 AT3G26300 383 / 3e-128 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.008G223500 [exp] 393 / 6e-132 AT3G26300 395 / 3e-133 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G075000 [exp] 392 / 8e-132 AT3G26300 386 / 2e-129 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G074850 [exp] 392 / 1e-131 AT3G26300 379 / 1e-126 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G074300 [exp] 388 / 3e-130 AT3G26300 343 / 6e-113 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.001G365100 [exp] 380 / 4e-127 AT3G26300 347 / 2e-114 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.001G364600 [exp] 372 / 6e-124 AT5G25120 352 / 2e-116 "ytochrome p450, family 71, subfamily B, polypeptide 11", ytochrome p450, family 71, subfamily B, polypeptide 11 (.1) Potri.001G365300 [exp] 342 / 3e-113 AT3G26300 291 / 7e-94 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10038158 pacid=23158278 polypeptide=Lus10038158 locus=Lus10038158.g ID=Lus10038158.BGIv1.0 annot-version=v1.0 ATGGACTTTCTGGGTTTTGATTCCCTCGCACTCATAGCTTCACTTCTCTTCCTCTTTTATGTACTAACAAAAACACTCACTGCGAGTACTGATCCAAACC TCCCACCAGGACCTTCGACTCTGCCACTACTAGGAAACATCCACAACCTCATATTCTCTACTCCTTTACTCCACCGCAAACTCCACCAACTATCACACCA CTACGGACCCTTTTACCGCCTGAAACTCGGCCAAATAACCCTCATGGTAGCCTCAACGCCACAAGTGGCCAAGCAAGTACTCAAAGACAATGACCTCACG TTTGCACAGAGATCCCCACTTCTGTTTCCCTCACTCATCTTCTACGACTGCTCCGACATCCTCTTCTCTCCCTACGGCGAATACTGGAGGCACCTCCGAA AGGTCTGCCAGGCAGAACTCCTCAGCCCCAAACGCGTCCAGTCCTTCGCTTCGATTCGCAGGCAGGAAGTGTCGAACCTGATCGATTCTGTTCGAAAAGG ATCGAATAAAGGCGGTGGTGTTAATTTGAGCAGGATGGTTTTTGAGGTGAGCTGTGGGGTGACTTGGAGAGCAGCATTTGGGGGGAGGAAGTGTGAGGAT CTAGAGTTGTTGAAGTCGTTGACGAATGATATTATGAAGCTGGCTTCTGGGTTGGGACTGGCTGATTTGTTCCCTTCCCATGGAGAGATGCTCAAGGGTT TGTCCAAAATGACCAACTTCAAACTAAGGAGGGTGATGAGAGATACGGATAGGATTCTCGAGGAGATACTCGACGACAACAAGGCGAAGGCCAAGGAGGC AGCCGGGAGAGTGGAGAACTTGGTTGATGTACTTCTGAGGCTGCAGCGGAATGCTGATGACCAACTTCAGTTTCCGTTGTCCGACAACAATATTAAAGCA GTCCTCCTGGACATCTTGGTTGCTGGAAGCCAAACATCATCAGCGACAATTGGATGGATAATGTCAGAGATTGTGAAGAATCCCTCAGCAATGGAAAGGG CTCAAGCTGAAGTGAGACGAGTTTTCAACAGCAAACTACATATTGATGGAGAAACCCCCATTGATCAGGAACTCCGATTCCTAAAATGCTGCATCAAAGA GGCCATAAGGCTCCATCCGCCAGTAGCTTTGATTGTCAGGGAAAGTCGCACCAGCTGCAACATTTGTGCATACGACATTCCGCCCAAGACTATAGTCGCG GTCAACGCATGGTCGACATTTCGGGATCCCAGGTACTGGAAAGATCCCGAGATGTTCGTACCGGAGAGGTTCCTAGACAGCAATACCGCGGTTACGAACT ATGTGGACAAGGATCGTTTTGAGTTCACTCCTTTCGGCGCTGGAAGAAGGATGTGTCCTGGGATATCGTTTGCTATGGCCAACATTGAGCTGCCCGTCGC GAAACTGCTGTACCATTTCGATTGGAAGTTGCCCGGAGGGATGAAACACCAGGACCTTGACATGGTTGAGAGCTTTGGTGTTACTGTTAGAAGGAAGAAC GACCTCATCTTGATTCCTATTCCTTATTGCCCCTCTTTTACAGATTGA
AA sequence Show only first row Show all	>Lus10038158 pacid=23158278 polypeptide=Lus10038158 locus=Lus10038158.g ID=Lus10038158.BGIv1.0 annot-version=v1.0 MDFLGFDSLALIASLLFLFYVLTKTLTASTDPNLPPGPSTLPLLGNIHNLIFSTPLLHRKLHQLSHHYGPFYRLKLGQITLMVASTPQVAKQVLKDNDLT FAQRSPLLFPSLIFYDCSDILFSPYGEYWRHLRKVCQAELLSPKRVQSFASIRRQEVSNLIDSVRKGSNKGGGVNLSRMVFEVSCGVTWRAAFGGRKCED LELLKSLTNDIMKLASGLGLADLFPSHGEMLKGLSKMTNFKLRRVMRDTDRILEEILDDNKAKAKEAAGRVENLVDVLLRLQRNADDQLQFPLSDNNIKA VLLDILVAGSQTSSATIGWIMSEIVKNPSAMERAQAEVRRVFNSKLHIDGETPIDQELRFLKCCIKEAIRLHPPVALIVRESRTSCNICAYDIPPKTIVA VNAWSTFRDPRYWKDPEMFVPERFLDSNTAVTNYVDKDRFEFTPFGAGRRMCPGISFAMANIELPVAKLLYHFDWKLPGGMKHQDLDMVESFGVTVRRKN DLILIPIPYCPSFTD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G25140		CYP71B13	"cytochrome P450, family 71, s...		Lus10038158 [exp]	0	1
AT3G06120	bHLH	MUTE, bHLH045	MUTE, basic helix-loop-helix (...		Lus10034031 [exp]	1.0	0.9669
AT3G63520		ATNCED1, ATCCD1...	carotenoid cleavage dioxygenas...		Lus10042829 [exp]	1.4	0.9542
AT1G64820			MATE efflux family protein (.1...		Lus10028504 [exp]	1.7	0.9261
AT3G45140		ATLOX2, LOX2	ARABIODOPSIS THALIANA LIPOXYGE...		Lus10039094 [exp]	2.0	0.9259
					Lus10039628 [exp]	6.5	0.8575
AT4G17810	C2H2ZnF	ZFP12	C2H2 and C2HC zinc fingers sup...		Lus10030967 [exp]	6.9	0.8997
AT1G04110		SDD1	STOMATAL DENSITY AND DISTRIBUT...		Lus10024960 [exp]	7.7	0.9035
AT3G02110		SCPL25	serine carboxypeptidase-like 2...		Lus10015382 [exp]	15.6	0.8849
AT3G52780		ATPAP20, PAP20	Purple acid phosphatases super...		Lus10021376 [exp]	18.8	0.8632
AT5G01630		BRCA2(V), ATBRC...	BRCA2-like B (.1)		Lus10012228 [exp]	19.7	0.8857

Compare expression of checked genes

Lus10038158 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.