Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24715 232 / 3e-63 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT1G04700 191 / 7e-50 PB1 domain-containing protein tyrosine kinase (.1) AT1G79570 172 / 9e-44 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT1G16270 146 / 2e-35 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1.2) AT2G35050 137 / 7e-33 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT3G46920 124 / 1e-28 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT5G49920 110 / 2e-26 Octicosapeptide/Phox/Bem1p family protein (.1) AT5G57610 110 / 3e-24 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT5G09620 101 / 5e-22 Octicosapeptide/Phox/Bem1p family protein (.1) AT5G64430 99 / 3e-21 Octicosapeptide/Phox/Bem1p family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025941 [exp] 1602 / 0 AT3G24715 424 / 2e-129 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10031750 [exp] 154 / 1e-40 AT1G79570 334 / 1e-104 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10031173 [exp] 158 / 2e-39 AT1G79570 963 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10040006 [exp] 124 / 1e-28 AT3G46920 604 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10019577 [exp] 124 / 2e-28 AT3G46920 606 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10002588 [exp] 110 / 3e-25 AT4G05150 319 / 2e-104 Octicosapeptide/Phox/Bem1p family protein (.1) Lus10018412 [exp] 109 / 8e-25 AT4G05150 304 / 1e-98 Octicosapeptide/Phox/Bem1p family protein (.1) Lus10001314 [exp] 105 / 2e-23 AT5G57610 393 / 1e-125 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10035772 [exp] 103 / 2e-23 AT5G49920 196 / 2e-60 Octicosapeptide/Phox/Bem1p family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G176100 [exp] 208 / 2e-55 AT1G04700 725 / 0.0 PB1 domain-containing protein tyrosine kinase (.1) Potri.001G052000 [exp] 186 / 4e-48 AT1G04700 721 / 0.0 PB1 domain-containing protein tyrosine kinase (.1) Potri.003G110000 [exp] 173 / 5e-44 AT2G35050 672 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Potri.001G123500 [exp] 164 / 5e-41 AT2G35050 660 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Potri.005G095200 [exp] 151 / 4e-37 AT1G79570 641 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Potri.007G069500 [exp] 149 / 2e-36 AT1G16270 994 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1.2) Potri.018G114300 [exp] 130 / 1e-30 AT3G46920 646 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Potri.006G190200 [exp] 125 / 4e-29 AT3G46920 652 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Potri.004G224500 [exp] 112 / 2e-26 AT5G49920 185 / 3e-56 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.003G006200 [exp] 106 / 6e-25 AT5G49920 188 / 3e-58 Octicosapeptide/Phox/Bem1p family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [flax] [poplar] Ubiquitin PF00564 [flax] [poplar] PB1 PB1 domain
Representative CDS sequence Show only first row Show all	>Lus10038159 pacid=23158496 polypeptide=Lus10038159 locus=Lus10038159.g ID=Lus10038159.BGIv1.0 annot-version=v1.0 ATGGATGCTTCTGCACAATGGATGCAGCACCAGAAGGAGTTGGGATCTACTTTCAGTGGCGGTACAGGGAGGAATGTACATAACATATCCATGCAGACGG GCGAGGAGTTTTCAATGGAGTTTCTCCAAGAGCGTGCCAATGCTAGGGGGGCGACTCGTCCTATGCCAAACACGGGTCCAACTTATGATAGGAGAGGTTC GTTTAACAGTAATGACTTGATTCATCAGCTGGGCTATGAGGATGCTTCTCGTGTTATTACTTTGAAGAGAATGGATTCCGATGTTTCTGCTTCTTCAATG GGATCTCCAAGGGAGAATGAAAATTCTTACTTTGTTGATAAGGTAACTTGGGTTAATGTGGAGGACGGTGGTAATGTAGTTCAAAGATCGAGGATGGCAT ACGGTGAGCTGAATGATAGAGGGCCTGGTTTGGGTTCAACAACTTCTGTCTTTTATGCCCACGAATCTCCTCGCGGAGACAACATTAATGGCCTGCTAAA TTTTTCTGACAGACTTCAGCCAGGAAAAATGAAACTCCTTTGTAGTTCTGGTGGCAAAATTCTGCCGAGGCCTGGTGATGGCAAGTTAAGATATGTAGGT GGGGAGACCCGCATTATTTCCATTACCAAGAATCTATCATTGAATGATCTTGTGAGAAAAACTTCTTGTATTTGCAATCAACCTCACTTTATCAAGTACC AGCTTCCGGGGGAGGATCTTGATGCACTTATATCAGTGTCTTCTGATGAGGACCTTCAGAATATGCTAGAGGAATGCTGTGGACTTGAAAAGCCTGGTGG TTCTTCAAGTCCAAGGCTTCGTATTTTTCTGATTCCAATGGGTGAATATGACACTTTGTCATCTTTTGATGTTACTACATCCATGCTGCAAGATAGTCCA GACTTCCAATATGTTGTAGCTGTCAATGGCATTGTTGATCCAAGTCCCAGGAAAAACTGTCCTGAGAGGTCATCTGGGAATGATTCAAGTGCATTTCCAG TGAAGTTCAATCGTAATCCAAGCTTTCACAAGCGTGCTCCACCTTCCTTACTACCTTTAGAAATCAATGGTAGTTTTAATTCTTTTCAGAACATGAGATC TCCATATCCTTCTCCTCCCATCTCTCCAGCTCCATGTTCTCCCATACCCTTACATGGGGATAGGTCAAGTATGGAAAGCAATAATTCCTTCATGCCAGCA TCATCATCAGCTGATAATTCTGGCCTTAACACAGGTTATCACCAACAACTGCATGAGTCAGTGGCCTTGACAAGGTATAGACATCCCTGCAGACATATTG ATAGTGGACAGTGTGAACAACCATATGTTATGCAATATCAGAATTTTCATTTCAATAAAGAACCTGGTAGCCCTTCAGGTCATTGCAATGGTTTTTATCA CGACAGGAATATTCAGAGGGGTCACCACTTCCTCTCCGATAATCCTATTATTTCATCTTCAGAGGATTCTGGAGGTGTATTGATGAGCGACTGCTCTCAT GGCATGCCACATGCATTTTCAGATTCAAAACTGCAGGAGCGAGGGGAAATGTCTGCTTATTGTTCACAGGAAGGAATGGGTTCATCACACCAGCTTAAAC ATTCCAAGACACTGATATCCCCTCTTTCGAATTTGAGTACTTCCAGGGAAAAGCCATTCCAGGTCTTTGAATCACGGCACCGAGCTCTTAGCATCACAGA TGACAAATATCATGTTTCAAACCTTAGCAACGAAAACGTAATGGATTTGGAAGCAACCAGTAAGTGTGACCAAATTGATCCATTATTACAACAAAGCAAA ATGAGCTTTTGGGAGAAGCCACCTATAGATTGCAAAAAGAAATTACTGAATTTTAACGTTGAGCCCTTATCTTCATGCGGTAATTCTCTCTCAAGAAACA TCCAAACACATGCGGAAGAATATGCAGCCGGTGAGGATTTGAAGCCTACTATTAATAATTTGGAACATCCCCATAATTATCAGCTAGGAAGTGTCCCTTC AGATTTCCTGATGAATCGCATGACCGCCAGTGATCAACCATATGCTCCCACTATAACTGATGTGAAGTTGCAGAATACTAGTCAACATCCCAACGCTGAA AGTTCTTTGCATGGTCTTGTATTCCAGCCATCGTACAACACATTTTCTCTTAGAGAGAATACAATTCAATCGATTGAAGGCCAAATGAGGCATGTACACG CATTCACACGGGTGGATGAAAAGATTGCTGTGAAGATTATGGAACCAACTTGTCTCCTTGATGATGGCCATGTTAACTCCTTGTCTCAGGATTTGGGGAA GCTGAATTACGGAGAATATAAAGATGAGAGTTCAGATACTGAGGATATCTTGCTGATACAGAAAAGAAACCCAAGTGAACAAAAAGGTCTGATCATGTTG GAGCCTTTGGTTGCCGTTACAGATGGCAATGAACCTAGTAGTGTTATAGTTTCATCTGCCGCTGCCTCTCGAGTCACTGTCCCGACTAGTGGTGGCTTTG TCTCTGCTACGGTGTCAGATTTTGAATCACCACATGTGATCATGCAGCCCATTGCTGCTAGAGAGACCCGCAGTGATATTTTGTCTACTGTCACAACGAG GCTGGAGAGTGTCTTCCAAGAATCTGAGTTTGAGGGAACAGAAGCTATTGGAAATGATTTTTCATTTTCCCGCCAAACTTCACACTCTCCAAGCTTCAAG TGA
AA sequence Show only first row Show all	>Lus10038159 pacid=23158496 polypeptide=Lus10038159 locus=Lus10038159.g ID=Lus10038159.BGIv1.0 annot-version=v1.0 MDASAQWMQHQKELGSTFSGGTGRNVHNISMQTGEEFSMEFLQERANARGATRPMPNTGPTYDRRGSFNSNDLIHQLGYEDASRVITLKRMDSDVSASSM GSPRENENSYFVDKVTWVNVEDGGNVVQRSRMAYGELNDRGPGLGSTTSVFYAHESPRGDNINGLLNFSDRLQPGKMKLLCSSGGKILPRPGDGKLRYVG GETRIISITKNLSLNDLVRKTSCICNQPHFIKYQLPGEDLDALISVSSDEDLQNMLEECCGLEKPGGSSSPRLRIFLIPMGEYDTLSSFDVTTSMLQDSP DFQYVVAVNGIVDPSPRKNCPERSSGNDSSAFPVKFNRNPSFHKRAPPSLLPLEINGSFNSFQNMRSPYPSPPISPAPCSPIPLHGDRSSMESNNSFMPA SSSADNSGLNTGYHQQLHESVALTRYRHPCRHIDSGQCEQPYVMQYQNFHFNKEPGSPSGHCNGFYHDRNIQRGHHFLSDNPIISSSEDSGGVLMSDCSH GMPHAFSDSKLQERGEMSAYCSQEGMGSSHQLKHSKTLISPLSNLSTSREKPFQVFESRHRALSITDDKYHVSNLSNENVMDLEATSKCDQIDPLLQQSK MSFWEKPPIDCKKKLLNFNVEPLSSCGNSLSRNIQTHAEEYAAGEDLKPTINNLEHPHNYQLGSVPSDFLMNRMTASDQPYAPTITDVKLQNTSQHPNAE SSLHGLVFQPSYNTFSLRENTIQSIEGQMRHVHAFTRVDEKIAVKIMEPTCLLDDGHVNSLSQDLGKLNYGEYKDESSDTEDILLIQKRNPSEQKGLIML EPLVAVTDGNEPSSVIVSSAAASRVTVPTSGGFVSATVSDFESPHVIMQPIAARETRSDILSTVTTRLESVFQESEFEGTEAIGNDFSFSRQTSHSPSFK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G24715			Protein kinase superfamily pro...		Lus10038159 [exp]	0	1
AT4G30020			PA-domain containing subtilase...		Lus10006973 [exp]	1.4	0.8825
AT3G24715			Protein kinase superfamily pro...		Lus10025941 [exp]	3.2	0.8878
AT5G66520			Tetratricopeptide repeat (TPR)...		Lus10027389 [exp]	3.3	0.8293
AT1G04200			unknown protein		Lus10006619 [exp]	6.5	0.8613
AT3G14460			LRR and NB-ARC domains-contain...		Lus10039509 [exp]	8.9	0.8301
AT2G42520			P-loop containing nucleoside t...		Lus10016207 [exp]	11.2	0.8162
AT2G26100			Galactosyltransferase family p...		Lus10014451 [exp]	13.9	0.8480
AT5G65160		TPR14	tetratricopeptide repeat 14, t...		Lus10022500 [exp]	14.0	0.7876
AT1G04120		ATABCC5, ABCC5,...	MULTIDRUG RESISTANCE PROTEIN 5...		Lus10022858 [exp]	15.7	0.8451
AT5G16720			Protein of unknown function, D...		Lus10004050 [exp]	17.1	0.8455

Compare expression of checked genes

Lus10038159 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.