Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24715 526 / 7e-179 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT1G04700 507 / 2e-172 PB1 domain-containing protein tyrosine kinase (.1) AT1G16270 485 / 9e-163 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1.2) AT1G79570 485 / 8e-162 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT2G35050 473 / 2e-157 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT5G57610 442 / 3e-147 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT3G46920 432 / 2e-142 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT1G67890 191 / 1e-54 PAS domain-containing protein tyrosine kinase family protein (.1.2) AT5G49470 184 / 9e-54 PAS domain-containing protein tyrosine kinase family protein (.1.2.3.4) AT3G06640 181 / 4e-51 PAS domain-containing protein tyrosine kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025941 [exp] 538 / 0 AT3G24715 424 / 2e-129 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10031749 [exp] 479 / 1e-165 AT1G16270 703 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1.2) Lus10031173 [exp] 478 / 1e-160 AT1G79570 963 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10001315 [exp] 450 / 2e-155 AT5G57610 657 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10006977 [exp] 450 / 2e-150 AT5G57610 1048 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10040006 [exp] 449 / 1e-147 AT3G46920 604 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10019577 [exp] 451 / 2e-147 AT3G46920 606 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10027247 [exp] 183 / 3e-51 AT1G18160 987 / 0.0 Protein kinase superfamily protein (.1) Lus10031341 [exp] 181 / 1e-50 AT1G73660 682 / 0.0 protein tyrosine kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G176100 [exp] 513 / 4e-174 AT1G04700 725 / 0.0 PB1 domain-containing protein tyrosine kinase (.1) Potri.001G052000 [exp] 503 / 2e-170 AT1G04700 721 / 0.0 PB1 domain-containing protein tyrosine kinase (.1) Potri.003G110000 [exp] 499 / 6e-166 AT2G35050 672 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Potri.001G123500 [exp] 496 / 1e-165 AT2G35050 660 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Potri.005G095200 [exp] 488 / 5e-163 AT1G79570 641 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Potri.007G069500 [exp] 472 / 3e-157 AT1G16270 994 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1.2) Potri.006G170700 [exp] 452 / 2e-150 AT5G57610 1087 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Potri.006G190200 [exp] 455 / 6e-149 AT3G46920 652 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Potri.018G095800 [exp] 437 / 5e-145 AT5G57610 1075 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Potri.018G114300 [exp] 444 / 1e-144 AT3G46920 646 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10038160 pacid=23158472 polypeptide=Lus10038160 locus=Lus10038160.g ID=Lus10038160.BGIv1.0 annot-version=v1.0 ATGTACCACCTTTCTATCAATGAGAACGTTGAGCCATTTCATTTGAACACAAACGAGTTAATAGAAGCTGATGAACGAGATGTAGATGGATGCATCACTG ATGTGGCCATAGCCGAAATGGAGGCAAGCATCTACGGATTGCAGATCATAAAGAACTTGGACCTTGAAGAATTACAGGAGCTGGGATCAGGTACATATGG AACTGTCTACCATGGAAAGTGGCGGGGGACAGATGTCGCCATAAAAAGAATAAAAAAAAGCTGCTTTTCTGGGAGGTCATCTGAACAAGAACGATTGACA AAAGATTTCTGGAGGGAAGCACACATCCTGTCAACCCTCCACCACCCAAATGTGGTAGCGTTTTATGGGATTGTTCCTGATGGACCTGGAGGCACCTTAT CCACTGTAACTGAATTCATGGTTAATGGATCTCTTAGGCTTGCCTTACTTAAGAAAGACAAGTCTCTTGATCATCGTAAAAAACTTATGATTGCAATGGA TGCTGCATTTGGCATGGAATATTTGCACTCTAAACGTATTGTTCATTTTGATCTGAAGTGCGACAATTTGTTGGTTAACCTAAGGGATCCACACCGGCCT GTATGCAAGGTTGCGGATTTCGGATTGTCAAGGATCAAACGCAACACTCTCGTATCCGGTGGTGTTCGTGGAACCCTTCCTTGGATGGCACCAGAATTGT TAAATGGAAGCAGCAGTCGGGTTTCTGAAATGGTTGATGTTTTTTCATTTGGCATCTCAATGTGGGAGATCTTGACTGGAGAGGAGCCTTACGCTGACAT GCACTGTGGTGCAATTATTGGTGGGATCGCAAAGAACACCCTCCGACCTCCAGTATCTGAAGAATGCGATCAAGAATGGAGAATACTGATGGAGCAATGT TGGGCACCTAACCCGGATTCAAGACCGCCGTTTACAGAGATAGCGAATCGGTTGCGAGCTATGTCCCTGCTGGCACTTCAAGCTAAGGGAACTGGTAATC AAACGAGAGACAAACCAAACCAGAACCACAAATCACCATATGACCACCAGCAAAGTTAA
AA sequence Show only first row Show all	>Lus10038160 pacid=23158472 polypeptide=Lus10038160 locus=Lus10038160.g ID=Lus10038160.BGIv1.0 annot-version=v1.0 MYHLSINENVEPFHLNTNELIEADERDVDGCITDVAIAEMEASIYGLQIIKNLDLEELQELGSGTYGTVYHGKWRGTDVAIKRIKKSCFSGRSSEQERLT KDFWREAHILSTLHHPNVVAFYGIVPDGPGGTLSTVTEFMVNGSLRLALLKKDKSLDHRKKLMIAMDAAFGMEYLHSKRIVHFDLKCDNLLVNLRDPHRP VCKVADFGLSRIKRNTLVSGGVRGTLPWMAPELLNGSSSRVSEMVDVFSFGISMWEILTGEEPYADMHCGAIIGGIAKNTLRPPVSEECDQEWRILMEQC WAPNPDSRPPFTEIANRLRAMSLLALQAKGTGNQTRDKPNQNHKSPYDHQQS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G24715			Protein kinase superfamily pro...		Lus10038160 [exp]	0	1
AT1G14720		ATXTH28, EXGT-A...	xyloglucan endotransglycosylas...		Lus10029000 [exp]	8.8	0.8279
AT5G20680		TBL16	TRICHOME BIREFRINGENCE-LIKE 16...		Lus10027651 [exp]	11.5	0.8032
AT5G20480		EFR	EF-TU receptor (.1)		Lus10022864 [exp]	11.9	0.8102
AT1G04990	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10029988 [exp]	13.7	0.7772
AT1G13130			Cellulase (glycosyl hydrolase ...		Lus10011404 [exp]	14.0	0.8084
AT4G30440		GAE1	UDP-D-glucuronate 4-epimerase ...		Lus10008893 [exp]	15.1	0.8171
AT1G34270			Exostosin family protein (.1)		Lus10031610 [exp]	22.9	0.7837
AT5G04930		ALA1	aminophospholipid ATPase 1 (.1...		Lus10028873 [exp]	24.1	0.7311
AT5G42660			Protein of unknown function (D...		Lus10024684 [exp]	27.7	0.7889
AT1G69830		ATAMY3, AMY3	alpha-amylase-like 3 (.1)		Lus10013270 [exp]	27.9	0.8025

Compare expression of checked genes

Lus10038160 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.