Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52170 105 / 4e-26 HD HDG7 homeodomain GLABROUS 7 (.1) AT3G61150 100 / 3e-24 HD HD-GL2-1, HDG1 HOMEODOMAIN-GLABRA2 1, homeodomain GLABROUS 1 (.1) AT1G05230 98 / 2e-23 HD HDG2 homeodomain GLABROUS 2 (.1.2.3.4) AT4G04890 94 / 3e-22 HD PDF2 protodermal factor 2 (.1) AT4G00730 92 / 2e-21 HD AHDP, ANL2 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) AT4G21750 84 / 1e-18 HD ATML1 MERISTEM LAYER 1, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) AT2G32370 81 / 2e-17 HD HDG3 homeodomain GLABROUS 3 (.1) AT4G25530 79 / 5e-17 HD HDG6, FWA HOMEODOMAIN GLABROUS 6, FLOWERING WAGENINGEN (.1) AT1G17920 74 / 3e-15 HD HDG12 homeodomain GLABROUS 12 (.1) AT1G73360 69 / 2e-13 HD ATHDG11, HDG11, EDT1 ENHANCED DROUGHT TOLERANCE 1, homeodomain GLABROUS 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025940 [exp] 208 / 4e-63 AT3G61150 504 / 1e-168 HOMEODOMAIN-GLABRA2 1, homeodomain GLABROUS 1 (.1) Lus10038876 [exp] 140 / 3e-40 AT3G61150 296 / 1e-93 HOMEODOMAIN-GLABRA2 1, homeodomain GLABROUS 1 (.1) Lus10031933 [exp] 144 / 5e-40 AT3G61150 410 / 1e-133 HOMEODOMAIN-GLABRA2 1, homeodomain GLABROUS 1 (.1) Lus10027437 [exp] 119 / 1e-30 AT3G61150 715 / 0.0 HOMEODOMAIN-GLABRA2 1, homeodomain GLABROUS 1 (.1) Lus10035095 [exp] 110 / 2e-29 AT5G52170 162 / 2e-46 homeodomain GLABROUS 7 (.1) Lus10005759 [exp] 112 / 3e-28 AT3G61150 706 / 0.0 HOMEODOMAIN-GLABRA2 1, homeodomain GLABROUS 1 (.1) Lus10014997 [exp] 111 / 5e-28 AT4G00730 559 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Lus10041361 [exp] 100 / 9e-27 AT3G61150 223 / 6e-69 HOMEODOMAIN-GLABRA2 1, homeodomain GLABROUS 1 (.1) Lus10005758 [exp] 107 / 1e-26 AT3G61150 419 / 3e-137 HOMEODOMAIN-GLABRA2 1, homeodomain GLABROUS 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G141800 [exp] 108 / 3e-27 AT4G00730 829 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Potri.002G154700 [exp] 101 / 1e-24 AT4G00730 1057 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Potri.014G075200 [exp] 101 / 1e-24 AT4G00730 1045 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Potri.012G139300 [exp] 100 / 2e-24 AT4G00730 838 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Potri.002G230200 [exp] 99 / 1e-23 AT1G05230 1159 / 0.0 homeodomain GLABROUS 2 (.1.2.3.4) Potri.004G020400 [exp] 92 / 2e-21 AT4G04890 1185 / 0.0 protodermal factor 2 (.1) Potri.014G152000 [exp] 92 / 2e-21 AT1G05230 1179 / 0.0 homeodomain GLABROUS 2 (.1.2.3.4) Potri.011G025000 [exp] 91 / 7e-21 AT4G21750 1164 / 0.0 MERISTEM LAYER 1, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Potri.015G034100 [exp] 82 / 6e-18 AT1G73360 927 / 0.0 ENHANCED DROUGHT TOLERANCE 1, homeodomain GLABROUS 11 (.1) Potri.012G038500 [exp] 80 / 3e-17 AT1G73360 920 / 0.0 ENHANCED DROUGHT TOLERANCE 1, homeodomain GLABROUS 11 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10038161 pacid=23158494 polypeptide=Lus10038161 locus=Lus10038161.g ID=Lus10038161.BGIv1.0 annot-version=v1.0 ATGGAAAAAACCTGTGAACTTAACATTCCTACTGATGCTGATGCCCAACAAGTTGATGTTGTTGTTGTCAACTTGGTGGAAAGACTCGATGTCAAACCCG AGTTAGGTTCGAACATGAATCAGTTGGGTGGCTCAAGTCATGATGAGATGCAACAACATACTAGTAAGAGGAAGTGCTATCGCCACACCAAAGAGCAAAT CAAAGAGCTTGAAAGTTTCTTCGATGAGTGTGCTTATTCGGATGAAAAGCGACTGAACGTATTTAGCAGAAAACTTGGATTAGAAATTATGCAACAATAT GGTGGTAGCCCTGGACCTGTATTGATCCTCCAAGAAATATGGAACGACGAGTCCTCTTCTTTGATGGTGTATGCACCTGTGGACATGCGGTCGATGCAGA TGGTGATGAATGGAGGAGACACCACCTATGTGGCTCTCTTGCCATCCGGGTTGGCCATCGTTCCTGATAACAACAGTGGCGTTGGTAGTGGTGATGCTAA TGGTATTGGTAGTAGTGGAGGATGTATCATGACGGTAGGGTTCCAGATATTGGTGAGCTCCGAGGTGACGAGGACCTCGGTGGAGATCATGGACCAAGCC GTCTCTTGCACTATTCAACGTATCAAGGATATCTTTCAGATTTTGATGGTGGACTCGGCTTGA
AA sequence Show only first row Show all	>Lus10038161 pacid=23158494 polypeptide=Lus10038161 locus=Lus10038161.g ID=Lus10038161.BGIv1.0 annot-version=v1.0 MEKTCELNIPTDADAQQVDVVVVNLVERLDVKPELGSNMNQLGGSSHDEMQQHTSKRKCYRHTKEQIKELESFFDECAYSDEKRLNVFSRKLGLEIMQQY GGSPGPVLILQEIWNDESSSLMVYAPVDMRSMQMVMNGGDTTYVALLPSGLAIVPDNNSGVGSGDANGIGSSGGCIMTVGFQILVSSEVTRTSVEIMDQA VSCTIQRIKDIFQILMVDSA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G05230	HD	HDG2	homeodomain GLABROUS 2 (.1.2.3...		Lus10038161 [exp]	0	1

Compare expression of checked genes

Lus10038161 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.