Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26880 65 / 3e-14 Plant self-incompatibility protein S1 family (.1) AT5G04350 61 / 1e-12 Plant self-incompatibility protein S1 family (.1) AT4G29035 57 / 6e-11 Plant self-incompatibility protein S1 family (.1) AT4G16295 57 / 8e-11 SPH1 S-protein homologue 1 (.1) AT5G04347 55 / 2e-10 Plant self-incompatibility protein S1 family (.1) AT1G28306 55 / 4e-10 Plant self-incompatibility protein S1 family (.1) AT3G16970 55 / 4e-10 Plant self-incompatibility protein S1 family (.1) AT3G17080 54 / 5e-10 Plant self-incompatibility protein S1 family (.1) AT1G11765 54 / 6e-10 Plant self-incompatibility protein S1 family (.1) AT5G12060 54 / 7e-10 Plant self-incompatibility protein S1 family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025937 [exp] 289 / 2e-100 AT3G26880 68 / 4e-14 Plant self-incompatibility protein S1 family (.1) Lus10038164 [exp] 271 / 2e-95 AT3G26880 68 / 2e-15 Plant self-incompatibility protein S1 family (.1) Lus10025935 [exp] 270 / 3e-95 AT3G26880 68 / 2e-15 Plant self-incompatibility protein S1 family (.1) Lus10011897 [exp] 91 / 5e-24 AT2G06090 73 / 2e-17 Plant self-incompatibility protein S1 family (.1) Lus10022831 [exp] 84 / 3e-21 AT2G06090 63 / 2e-13 Plant self-incompatibility protein S1 family (.1) Lus10011892 [exp] 80 / 1e-19 AT4G16295 71 / 3e-16 S-protein homologue 1 (.1) Lus10022824 [exp] 78 / 4e-19 AT5G04347 67 / 9e-15 Plant self-incompatibility protein S1 family (.1) Lus10011895 [exp] 77 / 2e-18 AT4G29035 72 / 3e-16 Plant self-incompatibility protein S1 family (.1) Lus10002747 [exp] 73 / 2e-17 AT5G04350 57 / 3e-11 Plant self-incompatibility protein S1 family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G066900 [exp] 77 / 9e-19 AT4G29035 85 / 1e-21 Plant self-incompatibility protein S1 family (.1) Potri.002G252500 [exp] 70 / 7e-16 AT4G16295 116 / 9e-34 S-protein homologue 1 (.1) Potri.004G199700 [exp] 69 / 3e-15 AT4G16295 69 / 2e-15 S-protein homologue 1 (.1) Potri.010G008300 [exp] 66 / 2e-14 AT3G17080 74 / 8e-18 Plant self-incompatibility protein S1 family (.1) Potri.006G170200 [exp] 56 / 2e-10 AT5G12060 48 / 1e-07 Plant self-incompatibility protein S1 family (.1) Potri.003G175200 [exp] 53 / 2e-09 AT3G24060 177 / 2e-58 Plant self-incompatibility protein S1 family (.1) Potri.003G201300 [exp] 49 / 7e-08 AT2G06090 65 / 5e-14 Plant self-incompatibility protein S1 family (.1) Potri.004G199801 [exp] 48 / 2e-07 AT4G16295 67 / 2e-14 S-protein homologue 1 (.1) Potri.001G053100 [exp] 45 / 9e-07 AT3G24060 171 / 2e-55 Plant self-incompatibility protein S1 family (.1) Potri.001G053300 [exp] 45 / 1e-06 AT3G24060 82 / 2e-20 Plant self-incompatibility protein S1 family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05938 [flax] [poplar] Self-incomp_S1 Plant self-incompatibility protein S1
Representative CDS sequence Show only first row Show all	>Lus10038163 pacid=23158361 polypeptide=Lus10038163 locus=Lus10038163.g ID=Lus10038163.BGIv1.0 annot-version=v1.0 ATGAGCTCGCAAATGGTGATGTCAAAAATATTAGTGGCAGTCATTTTGGGAGCAATAATAACGGCAAGTCCGTCGGCGGCAACTCATTTTGACATCAATG TTATCAACCAGTTAAGCCACGACCGCAAGCTATCAGTTCACTGCCAATCTAAGGACACCAATCTCGGCTCCCGGAAACTAGCCGTCGGCGAAGTTTATGG ATGGGGCTTCTCCAGAAACATTTTTGGTACTACACTTTTCTGGTGCAATCTTTCTTGTCACGGTGGCCACAATCGTCTTTCGTTCAATGCGTACGATGAG AGTCAAGGAAAGGGCATGAAACCAATTTACGAACTCAACTGGGAACTTAAGGATGATGGCCTTTATTTCCGGGACAAAGATTCGGGCATGGAAGTTATGG TTGCACCATGGATGCAGCAGTAG
AA sequence Show only first row Show all	>Lus10038163 pacid=23158361 polypeptide=Lus10038163 locus=Lus10038163.g ID=Lus10038163.BGIv1.0 annot-version=v1.0 MSSQMVMSKILVAVILGAIITASPSAATHFDINVINQLSHDRKLSVHCQSKDTNLGSRKLAVGEVYGWGFSRNIFGTTLFWCNLSCHGGHNRLSFNAYDE SQGKGMKPIYELNWELKDDGLYFRDKDSGMEVMVAPWMQQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26880			Plant self-incompatibility pro...		Lus10038163 [exp]	0	1
AT1G51990			O-methyltransferase family pro...		Lus10002668 [exp]	2.0	0.9253
AT1G69880		ATH8	thioredoxin H-type 8 (.1)		Lus10037225 [exp]	4.9	0.9323
AT5G17770		CBR1, ATCBR	NADH:cytochrome B5 reductase 1...		Lus10033405 [exp]	7.9	0.9291
AT1G17050		SPS2	solanesyl diphosphate synthase...		Lus10042491 [exp]	9.5	0.8974
					Lus10038232 [exp]	10.4	0.9259
AT3G19910			RING/U-box superfamily protein...		Lus10029693 [exp]	11.6	0.9242
AT2G30540			Thioredoxin superfamily protei...		Lus10040899 [exp]	13.4	0.9172
					Lus10015603 [exp]	13.5	0.8889
AT1G35470			SPla/RYanodine receptor (SPRY)...		Lus10009445 [exp]	14.5	0.9188
AT3G07880		SCN1	SUPERCENTIPEDE1, Immunoglobuli...		Lus10010491 [exp]	17.9	0.8621

Compare expression of checked genes

Lus10038163 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.