Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26880 68 / 2e-15 Plant self-incompatibility protein S1 family (.1) AT5G04350 61 / 2e-12 Plant self-incompatibility protein S1 family (.1) AT4G29035 57 / 8e-11 Plant self-incompatibility protein S1 family (.1) AT4G16195 57 / 1e-10 Plant self-incompatibility protein S1 family (.1) AT4G16295 56 / 1e-10 SPH1 S-protein homologue 1 (.1) AT5G04347 54 / 8e-10 Plant self-incompatibility protein S1 family (.1) AT5G27238 54 / 9e-10 Plant self-incompatibility protein S1 family (.1) AT3G17080 53 / 1e-09 Plant self-incompatibility protein S1 family (.1) AT1G11765 53 / 1e-09 Plant self-incompatibility protein S1 family (.1) AT2G06090 52 / 5e-09 Plant self-incompatibility protein S1 family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038163 [exp] 271 / 2e-95 AT3G26880 65 / 3e-14 Plant self-incompatibility protein S1 family (.1) Lus10025937 [exp] 274 / 2e-94 AT3G26880 68 / 4e-14 Plant self-incompatibility protein S1 family (.1) Lus10025935 [exp] 263 / 4e-92 AT3G26880 68 / 2e-15 Plant self-incompatibility protein S1 family (.1) Lus10011897 [exp] 88 / 8e-23 AT2G06090 73 / 2e-17 Plant self-incompatibility protein S1 family (.1) Lus10022824 [exp] 77 / 2e-18 AT5G04347 67 / 9e-15 Plant self-incompatibility protein S1 family (.1) Lus10011895 [exp] 77 / 2e-18 AT4G29035 72 / 3e-16 Plant self-incompatibility protein S1 family (.1) Lus10022831 [exp] 75 / 9e-18 AT2G06090 63 / 2e-13 Plant self-incompatibility protein S1 family (.1) Lus10011892 [exp] 73 / 6e-17 AT4G16295 71 / 3e-16 S-protein homologue 1 (.1) Lus10002747 [exp] 67 / 3e-15 AT5G04350 57 / 3e-11 Plant self-incompatibility protein S1 family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G066900 [exp] 74 / 2e-17 AT4G29035 85 / 1e-21 Plant self-incompatibility protein S1 family (.1) Potri.002G252500 [exp] 71 / 4e-16 AT4G16295 116 / 9e-34 S-protein homologue 1 (.1) Potri.004G199700 [exp] 66 / 2e-14 AT4G16295 69 / 2e-15 S-protein homologue 1 (.1) Potri.010G008300 [exp] 66 / 2e-14 AT3G17080 74 / 8e-18 Plant self-incompatibility protein S1 family (.1) Potri.006G170200 [exp] 55 / 5e-10 AT5G12060 48 / 1e-07 Plant self-incompatibility protein S1 family (.1) Potri.003G175200 [exp] 49 / 5e-08 AT3G24060 177 / 2e-58 Plant self-incompatibility protein S1 family (.1) Potri.003G201300 [exp] 48 / 1e-07 AT2G06090 65 / 5e-14 Plant self-incompatibility protein S1 family (.1) Potri.001G053300 [exp] 46 / 8e-07 AT3G24060 82 / 2e-20 Plant self-incompatibility protein S1 family (.1) Potri.004G199801 [exp] 45 / 1e-06 AT4G16295 67 / 2e-14 S-protein homologue 1 (.1) Potri.018G148700 [exp] 45 / 2e-06 AT1G04645 88 / 5e-23 Plant self-incompatibility protein S1 family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05938 [flax] [poplar] Self-incomp_S1 Plant self-incompatibility protein S1
Representative CDS sequence Show only first row Show all	>Lus10038164 pacid=23158218 polypeptide=Lus10038164 locus=Lus10038164.g ID=Lus10038164.BGIv1.0 annot-version=v1.0 ATGTCAAAAATATTAGTGGCAGTCATTTTGGGAGCAATAGTAAACGCAACTCCATCGGCGGGAAATCAATTTTTCATAGCGGCAACGCATTTTGACATCA ATGTCATCAACCAGTTAAGCCACGACCGCAAACTGTCAGTTCACTGCCAATCTAAAGACACCAATCTCGGCTCCCGAAAGTTAGCCGTCGGCGAAGTTTA TGGATGGGGCTTCTCCAGAAACATTTTTGGTACTACACTTTTCTGGTGCAATCTTTCTTGTCACGGTGGCCACAATCGCCTTTCGTTCAATGCGTACGAT GAAAGTCAAGGAAAGGGCATGAAACCAATTTACGAACTCAACTGGGAACTTAAGGATGATGGGCTTTATTTCCACGACAAAGATTCTGGCATGGAAGTTA TGGTTGCTCCATGGATGCAGCAGTAG
AA sequence Show only first row Show all	>Lus10038164 pacid=23158218 polypeptide=Lus10038164 locus=Lus10038164.g ID=Lus10038164.BGIv1.0 annot-version=v1.0 MSKILVAVILGAIVNATPSAGNQFFIAATHFDINVINQLSHDRKLSVHCQSKDTNLGSRKLAVGEVYGWGFSRNIFGTTLFWCNLSCHGGHNRLSFNAYD ESQGKGMKPIYELNWELKDDGLYFHDKDSGMEVMVAPWMQQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26880			Plant self-incompatibility pro...		Lus10038164 [exp]	0	1
AT2G05920			Subtilase family protein (.1)		Lus10006689 [exp]	2.6	0.9439
AT1G68630			PLAC8 family protein (.1)		Lus10009036 [exp]	3.2	0.9372
					Lus10002237 [exp]	5.7	0.9112
AT1G62935			unknown protein		Lus10009297 [exp]	5.9	0.9099
					Lus10041745 [exp]	6.9	0.9127
AT3G11480		BSMT1, ATBSMT1	S-adenosyl-L-methionine-depend...		Lus10032299 [exp]	7.9	0.8997
AT1G07476			unknown protein		Lus10016504 [exp]	8.3	0.7820
AT1G16160		WAKL5	wall associated kinase-like 5 ...		Lus10013143 [exp]	9.8	0.8885
AT3G25160			ER lumen protein retaining rec...		Lus10038198 [exp]	13.0	0.8362
AT3G11080		AtRLP35	receptor like protein 35 (.1)		Lus10004307 [exp]	14.0	0.8267

Compare expression of checked genes

Lus10038164 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.