Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48830 412 / 4e-139 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025934 [exp] 844 / 0 AT5G48830 446 / 2e-153 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G241200 [exp] 526 / 0 AT5G48830 489 / 9e-170 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12452 [flax] [poplar] DUF3685 Protein of unknown function (DUF3685)
Representative CDS sequence Show only first row Show all	>Lus10038165 pacid=23158150 polypeptide=Lus10038165 locus=Lus10038165.g ID=Lus10038165.BGIv1.0 annot-version=v1.0 ATGTGGGGCCTTGCCATCGTGTCTCAAACTGCCTATGCGGAGGAGCATCTGCGGAGGAGACGGAGGCTGCAGTGCCTCTCTAGACTTCCATTACAAGGTG CCTCACAGGTCTGTTCTGATAGTCAAATAGTCGATCCCATTCTTTTTGTTCATAGCGCAGGAACGAGACCTCGTTCAAAATGTGAAGAGGTTGGGAATTC TAGCATCTTACAGTCTCGTGCTGTCTTCATGAATTTCAGGAGAAGTGTTAAGTTTGACCAGCTGTCTGCATCAAAATGGGGTCGAGCTAAAGCATTTAAA CTGAGGGACAAGCATGTTTCAAGGAGGTGTAGTTGCTTCTCGTCTTTGGTGGATCCTGATGGTGCAACGCTGTCTGATTGGGTTTCTGTTAGCAACCAGT TGTTTTTATTGACAAGTGTATTCCTTACTTACATGGCTGGAGTAATACCCATCCACAAGTCCCCTTCATCTTCTCACAAAAGTGTGCTGGACCCAAATCC AGTGCCAATTGACACGGGTTCTTCTGGTAGACCGAGGAACAACAACGGTAACCAGAAGGACTTAACGCCAGCCTGGAATGGTGTGAAAGCTAAAGTCTTG GATTCTTTAGATGCTGTTGAGCAAGAGAGTTATCTGGTAGAGGAATTTCTCAAGTCAGAGAAGCAGCATTCAAAGCGGCCTTCAAGTTTGCATGCCGTGT CTGGAGGACCTAAGCTGCGCTTGCTTTGGGCTTCTTTTTATCACCTTGAGGAAGAGGCAGGCACTGTGAATAGCATATTAGGTGATGATCCAGCTGTTTC AATGGATGAATGGATGGTAATGTTTCCTAAAGTAATCAAAGACTCTTGTCATGATGTATGCACGGCTTGGTTAAAAGAGGAACTTCAGCTTGATAGTAAT AGATCGGACAAGGTACTAGCTTCTTTGATGATTGAGAAGCTAAAAAGAGATGATGCTATTTTTCAAAGCATTAGAAAATCCGGAAAGGAAGATCTTTATG CAGAGCTACTGTACTTTCTTAAATATGGGTCATTAAGGAATCCTCGGTTATATGATCATCACTTGTTTGTAACACATGGAGAGTCCATATTAGAGGACTT GGTCATAAACATAGCTGATGGTATAGCTAATTTGTATCTGGAGCTTATATCTGTTGATGGCAATTTGCCAGATGGAGTAAATGACCTGGGTATGCGTATG TGTAGTTTGTCAACACGAGCTCTGCAACAGTTACGGAATGAGGCTGCCCTGAATCAGTGGCTGTATCAAAACTTGGAGACAGTTGCATCGATATATGAAG ATCGATTTGATCTTTGTGTTATTGGGTCGGAAGTGATTGAGGAACCAAACAATAATCGGGGTCATAACAGTAGTTGGTGGAATCGGCTTTCACTTACAAA GTCTGCCACAGCATCATATGCAGTGCAATGCATCGTGATCGACCAGTTCCGTATGCCTGCAAAGAGAACCAAAGAGTTAAGAGCCTTGATAGGATGGAGA TACTACTACAGTCTGTACTTGGAGTTGTATGACATTGGTTTGCCGATGGTTAAAACAGTTATTGATAAAATCAGTAATGCCATCTCATTTTTTCTGGTCA CCTTGATTGGAAGGTCGCTAGGCCTCATCTACTCTGGTATTAGGCAGTCTCTGGGGTGGAAATGA
AA sequence Show only first row Show all	>Lus10038165 pacid=23158150 polypeptide=Lus10038165 locus=Lus10038165.g ID=Lus10038165.BGIv1.0 annot-version=v1.0 MWGLAIVSQTAYAEEHLRRRRRLQCLSRLPLQGASQVCSDSQIVDPILFVHSAGTRPRSKCEEVGNSSILQSRAVFMNFRRSVKFDQLSASKWGRAKAFK LRDKHVSRRCSCFSSLVDPDGATLSDWVSVSNQLFLLTSVFLTYMAGVIPIHKSPSSSHKSVLDPNPVPIDTGSSGRPRNNNGNQKDLTPAWNGVKAKVL DSLDAVEQESYLVEEFLKSEKQHSKRPSSLHAVSGGPKLRLLWASFYHLEEEAGTVNSILGDDPAVSMDEWMVMFPKVIKDSCHDVCTAWLKEELQLDSN RSDKVLASLMIEKLKRDDAIFQSIRKSGKEDLYAELLYFLKYGSLRNPRLYDHHLFVTHGESILEDLVINIADGIANLYLELISVDGNLPDGVNDLGMRM CSLSTRALQQLRNEAALNQWLYQNLETVASIYEDRFDLCVIGSEVIEEPNNNRGHNSSWWNRLSLTKSATASYAVQCIVIDQFRMPAKRTKELRALIGWR YYYSLYLELYDIGLPMVKTVIDKISNAISFFLVTLIGRSLGLIYSGIRQSLGWK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G48830			unknown protein		Lus10038165 [exp]	0	1
AT5G44600			S-adenosyl-L-methionine-depend...		Lus10001217 [exp]	3.0	0.9481
AT4G20760			NAD(P)-binding Rossmann-fold s...		Lus10038343 [exp]	4.9	0.9479
AT5G44600			S-adenosyl-L-methionine-depend...		Lus10038404 [exp]	5.1	0.9501
AT5G39830		DEG8, DEGP8	DEG PROTEASE 8, Trypsin family...		Lus10007262 [exp]	6.0	0.9492
AT1G04620		HCAR	7-hydroxymethyl chlorophyll a ...		Lus10043143 [exp]	7.4	0.9447
AT5G44520			NagB/RpiA/CoA transferase-like...		Lus10008059 [exp]	9.8	0.9410
AT5G16810			Protein kinase superfamily pro...		Lus10040743 [exp]	10.6	0.9414
AT2G30695			unknown protein		Lus10004790 [exp]	11.0	0.9424
AT1G65260		VIPP1, PTAC4	VESICLE-INDUCING PROTEIN IN PL...		Lus10027068 [exp]	11.2	0.9334
AT5G22640		EMB1211	embryo defective 1211, MORN (M...		Lus10034504 [exp]	12.1	0.8789

Compare expression of checked genes

Lus10038165 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.