Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48840 445 / 3e-154 ATPTS, PANC ARABIDOPSIS THALIANA PANTOTHENATE SYNTHETASE, homolog of bacterial PANC (.1) AT1G79910 144 / 1e-37 Regulator of Vps4 activity in the MVB pathway protein (.1.2) AT4G32350 97 / 8e-21 Regulator of Vps4 activity in the MVB pathway protein (.1) AT1G52315 90 / 3e-19 Regulator of Vps4 activity in the MVB pathway protein (.1) AT4G35730 79 / 2e-15 Regulator of Vps4 activity in the MVB pathway protein (.1) AT2G14830 73 / 1e-13 Regulator of Vps4 activity in the MVB pathway protein (.1.2) AT1G25420 67 / 6e-12 Regulator of Vps4 activity in the MVB pathway protein (.1.2.3) AT1G34220 68 / 1e-11 Regulator of Vps4 activity in the MVB pathway protein (.1.2) AT4G29440 54 / 3e-07 Regulator of Vps4 activity in the MVB pathway protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025932 [exp] 592 / 0 AT5G48840 440 / 2e-149 ARABIDOPSIS THALIANA PANTOTHENATE SYNTHETASE, homolog of bacterial PANC (.1) Lus10035885 [exp] 270 / 1e-83 AT1G79910 235 / 1e-72 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Lus10025779 [exp] 246 / 3e-74 AT1G79910 199 / 8e-59 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Lus10011455 [exp] 157 / 9e-43 AT1G79910 233 / 1e-73 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Lus10037536 [exp] 149 / 1e-39 AT1G79910 191 / 2e-57 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Lus10034905 [exp] 113 / 6e-26 AT4G32350 256 / 3e-75 Regulator of Vps4 activity in the MVB pathway protein (.1) Lus10023635 [exp] 111 / 2e-25 AT4G32350 252 / 9e-74 Regulator of Vps4 activity in the MVB pathway protein (.1) Lus10028383 [exp] 75 / 7e-14 AT4G35730 415 / 2e-142 Regulator of Vps4 activity in the MVB pathway protein (.1) Lus10041836 [exp] 74 / 1e-13 AT4G35730 423 / 2e-145 Regulator of Vps4 activity in the MVB pathway protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G240800 [exp] 468 / 6e-163 AT5G48840 462 / 4e-165 ARABIDOPSIS THALIANA PANTOTHENATE SYNTHETASE, homolog of bacterial PANC (.1) Potri.003G054500 [exp] 151 / 3e-39 AT1G79910 216 / 4e-65 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Potri.001G181300 [exp] 142 / 7e-36 AT1G79910 244 / 1e-75 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Potri.018G079500 [exp] 112 / 1e-25 AT4G32350 240 / 1e-69 Regulator of Vps4 activity in the MVB pathway protein (.1) Potri.003G054601 [exp] 92 / 2e-19 AT1G79910 140 / 3e-37 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Potri.003G054700 [exp] 83 / 2e-16 AT1G79910 141 / 1e-37 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Potri.008G121300 [exp] 75 / 2e-14 AT1G25420 361 / 3e-125 Regulator of Vps4 activity in the MVB pathway protein (.1.2.3) Potri.007G059800 [exp] 74 / 7e-14 AT4G35730 385 / 7e-130 Regulator of Vps4 activity in the MVB pathway protein (.1) Potri.013G117100 [exp] 74 / 1e-13 AT1G34220 357 / 2e-115 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Potri.019G087400 [exp] 69 / 4e-12 AT1G34220 357 / 5e-116 Regulator of Vps4 activity in the MVB pathway protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03398 [flax] [poplar] Ist1 Regulator of Vps4 activity in the MVB pathway CL0039 [flax] [poplar] HUP PF02569 [flax] [poplar] Pantoate_ligase Pantoate-beta-alanine ligase
Representative CDS sequence Show only first row Show all	>Lus10038167 pacid=23158354 polypeptide=Lus10038167 locus=Lus10038167.g ID=Lus10038167.BGIv1.0 annot-version=v1.0 ATGGAAGGTACAGAACCGCCGGTGATAGTTACCAACAAGGACGAAATGAGGAAATGGTCACGGGCCATGAGATGCAGAGGGAAGACGATAGCCTTGGTTC CCACAATGGGTTACCTCCATCAAGGCCATCTATCTCTCGTCAAACAAGCTCAATCCCTAGCCGATGTCATAGTGGTTTCAATCTATGTAAACCCAGGTCA ATTCGCTCCCACCGAGGATCTCTCCACTTACCCATCCGACTTCCAGGGCGACATCGAGAAGCTGCGCTCGGTCCAGGGCTGCCTGGTGGACGCCGTTTTC CATCCATACAACCTTTACGATTACGGAAGAAACAGAGAAGGGGAATTAGAGGAAGGGGAAAAGGTTGGGGAGGGGATTCCGTCGTCGTGCGTGGAGGAAA TGGGAGCAGGGCACGAGACCTGGATAAGGGTTGAGAAATTGGAGAGAGGACTGTGCGGGAAGAGCCGCCCAGTTTTCTTTAGGGGAGTTGCGACTGTGGT CACTAAGCTGTTCAATATCGTGGAGCCTGATGTCGCCGTGTTTGGGAAGAAGGATTACCAGCAGTGGCGGATTATTCAGAGAATGGTTAGAGATCTGGAT TTTGGGATAAGGATAGTCGGATGCGAGATAATGCGAGAGGAGGATGGTCTGGCAATGAGTTCACGAAATGTTAAACTATCTGCAGAACACAGGGAAAAGG CACTATCCATAAGCAGGGCACTGTTTGAAGCTAAATTGTTGGCAGAGAAGGGGCAGACAAATTGCGGGGAGTTGCGAGACAATGTCGTCCAAGCAATAAC CGGAGCAGGAGGGAAGGTCGATTATGCGGAGATTGTGGATCAAGAGAGTTTGGAGGCAGTAGAAGTAGTGAAGAGCCCCGTTGTGTTCTGCATCGCTGCA TGGTTCGGTACTGTCAGATTGATTGATAACCTTGAGATCAGCGTCAACTCATTGATAAAGGTGACCAAGGTGAGGCTGGAAGTGTCGAGGAAGAAGAAGA ACGCTGTGGTCAAATACCTTAAGAATGATATCGCTGACCTCCTTAGGATCGGTTTTGATTCCAATGCTTATAGCAGGGCTCAAGGGCTAATACTTGAGCA TAACTTGATTGCTGCTTACAAATTCTTGGAATATTTTTTCAACTGCATTGCAACCAATCTTGCAGTCTTAGACAAACAAAAAGAGGCCATACAATCTTTG ATGTATGCTGCAGCAAGATTGCCTGAGTTTCCAGAATGTTACTGTAACAAATGGCTAATAAACCGTGCAGTTCGAGGAGTTGTTGAATCCAAGGCGTGCA ACAAAGGAGACGAAGCTTCAGTACTACGTGATGTGGCTCGAGAATTTTCCATCAACTGGGATTCCAAATTCATAGAGGATAAACTCTCGAGACCTCCTCA TGCCTCCCAACAGGGAAAGAGCCTTGGTACATCAGCTGAGAAGTTACTGGGGACAAGTGATGAAGTAGAATTTGCATCACCAGGAAAGAAGAATTTCAAT TATAAAAAGCGTAGGCTTTATAGCAGCAGTGGGAGTGAGAACACCGATCAAGACAGTTCAGAACCTAGTCCAAGCTCAATGGGAACTACGAGTACTGTTT CAAAGGATGTAGTGGACAATAGCAAGATTCCCTACAGGTTTCTACCACCACCCTACGTCAGAACAATGCTAGACAAGCAGGATGTGAAGGACCAAGGTTC TTCGAAATTGACTTCTCCTGGTAATGTTGAATCAGGCAGTGAATCGCAACTAAAGCCGAGATCGGTTAGTAGAAGGCAACAGATGCAGTGA
AA sequence Show only first row Show all	>Lus10038167 pacid=23158354 polypeptide=Lus10038167 locus=Lus10038167.g ID=Lus10038167.BGIv1.0 annot-version=v1.0 MEGTEPPVIVTNKDEMRKWSRAMRCRGKTIALVPTMGYLHQGHLSLVKQAQSLADVIVVSIYVNPGQFAPTEDLSTYPSDFQGDIEKLRSVQGCLVDAVF HPYNLYDYGRNREGELEEGEKVGEGIPSSCVEEMGAGHETWIRVEKLERGLCGKSRPVFFRGVATVVTKLFNIVEPDVAVFGKKDYQQWRIIQRMVRDLD FGIRIVGCEIMREEDGLAMSSRNVKLSAEHREKALSISRALFEAKLLAEKGQTNCGELRDNVVQAITGAGGKVDYAEIVDQESLEAVEVVKSPVVFCIAA WFGTVRLIDNLEISVNSLIKVTKVRLEVSRKKKNAVVKYLKNDIADLLRIGFDSNAYSRAQGLILEHNLIAAYKFLEYFFNCIATNLAVLDKQKEAIQSL MYAAARLPEFPECYCNKWLINRAVRGVVESKACNKGDEASVLRDVAREFSINWDSKFIEDKLSRPPHASQQGKSLGTSAEKLLGTSDEVEFASPGKKNFN YKKRRLYSSSGSENTDQDSSEPSPSSMGTTSTVSKDVVDNSKIPYRFLPPPYVRTMLDKQDVKDQGSSKLTSPGNVESGSESQLKPRSVSRRQQMQ

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G48840		ATPTS, PANC	ARABIDOPSIS THALIANA PANTOTHEN...		Lus10038167 [exp]	0	1
AT3G59570			Ypt/Rab-GAP domain of gyp1p su...		Lus10022963 [exp]	5.1	0.7424
AT1G11760		MED32	unknown protein		Lus10030983 [exp]	7.7	0.7786
AT1G17450			B-block binding subunit of TFI...		Lus10015659 [exp]	14.8	0.7290
AT5G02250		ATMTRNASEII, RN...	ribonucleotide reductase 1, EM...		Lus10010842 [exp]	20.0	0.7308
AT5G51410			LUC7 N_terminus domain-contain...		Lus10027212 [exp]	20.3	0.7123
					Lus10017219 [exp]	22.8	0.7355
AT5G36930			Disease resistance protein (TI...		Lus10000738 [exp]	30.8	0.7044
AT1G54140		TAF9, TAFII21	TBP-ASSOCIATED FACTOR 9, TATA ...		Lus10022103 [exp]	32.0	0.7044
AT4G05440		EDA35	embryo sac development arrest ...		Lus10000812 [exp]	34.2	0.7057
AT3G58590			Pentatricopeptide repeat (PPR)...		Lus10020138 [exp]	36.9	0.6794

Compare expression of checked genes

Lus10038167 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.