Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07090 363 / 7e-128 PPPDE putative thiol peptidase family protein (.1) AT5G25170 66 / 7e-13 PPPDE putative thiol peptidase family protein (.1) AT2G25190 64 / 4e-12 PPPDE putative thiol peptidase family protein (.1) AT4G17486 62 / 2e-11 PPPDE putative thiol peptidase family protein (.1.2) AT4G31980 63 / 3e-11 unknown protein AT5G47310 59 / 3e-10 PPPDE putative thiol peptidase family protein (.1) AT1G47740 59 / 4e-10 PPPDE putative thiol peptidase family protein (.1.2) AT4G25680 59 / 5e-10 PPPDE putative thiol peptidase family protein (.1) AT4G25660 56 / 5e-09 PPPDE putative thiol peptidase family protein (.1) AT1G80690 55 / 1e-08 PPPDE putative thiol peptidase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025931 [exp] 426 / 9e-153 AT3G07090 311 / 1e-107 PPPDE putative thiol peptidase family protein (.1) Lus10043293 [exp] 68 / 2e-13 AT4G17486 243 / 3e-81 PPPDE putative thiol peptidase family protein (.1.2) Lus10019437 [exp] 67 / 4e-13 AT4G17486 241 / 1e-80 PPPDE putative thiol peptidase family protein (.1.2) Lus10005341 [exp] 67 / 5e-13 AT5G25170 303 / 9e-106 PPPDE putative thiol peptidase family protein (.1) Lus10041021 [exp] 66 / 8e-13 AT5G25170 309 / 5e-108 PPPDE putative thiol peptidase family protein (.1) Lus10013657 [exp] 66 / 2e-12 AT4G17486 243 / 1e-81 PPPDE putative thiol peptidase family protein (.1.2) Lus10018326 [exp] 63 / 1e-11 AT5G25170 314 / 3e-110 PPPDE putative thiol peptidase family protein (.1) Lus10017127 [exp] 62 / 2e-11 AT5G25170 312 / 3e-109 PPPDE putative thiol peptidase family protein (.1) Lus10004372 [exp] 64 / 3e-11 AT5G47310 244 / 1e-77 PPPDE putative thiol peptidase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G241700 [exp] 379 / 7e-134 AT3G07090 366 / 1e-128 PPPDE putative thiol peptidase family protein (.1) Potri.001G154400 [exp] 66 / 1e-12 AT5G47310 308 / 4e-107 PPPDE putative thiol peptidase family protein (.1) Potri.006G154400 [exp] 66 / 2e-12 AT4G17486 220 / 8e-73 PPPDE putative thiol peptidase family protein (.1.2) Potri.003G080300 [exp] 65 / 2e-12 AT5G47310 295 / 9e-102 PPPDE putative thiol peptidase family protein (.1) Potri.018G070600 [exp] 65 / 2e-12 AT4G17486 235 / 1e-78 PPPDE putative thiol peptidase family protein (.1.2) Potri.006G261500 [exp] 64 / 6e-12 AT5G25170 313 / 5e-109 PPPDE putative thiol peptidase family protein (.1) Potri.018G021700 [exp] 63 / 2e-11 AT5G25170 301 / 2e-104 PPPDE putative thiol peptidase family protein (.1) Potri.002G134200 [exp] 62 / 3e-11 AT1G47740 346 / 3e-121 PPPDE putative thiol peptidase family protein (.1.2) Potri.009G113168 [exp] 62 / 4e-11 AT1G47740 335 / 6e-117 PPPDE putative thiol peptidase family protein (.1.2) Potri.T126004 [exp] 61 / 6e-11 AT1G47740 337 / 2e-117 PPPDE putative thiol peptidase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF05903 [flax] [poplar] Peptidase_C97 PPPDE putative peptidase domain
Representative CDS sequence Show only first row Show all	>Lus10038168 pacid=23158214 polypeptide=Lus10038168 locus=Lus10038168.g ID=Lus10038168.BGIv1.0 annot-version=v1.0 ATGGAAGAGGAGGGGCACAGGGTAACCTTGAATGTGTATGATCTCAGCCAAGGACTTGCACGCCAGCTCTCAACTACCTTCCTAGGGAAAGCAATTGAGG GTATCTGGCATACCGGGGTGTCAGTGTATGGAAACGAATACTACTTTGGGGGAGGGATACAAAAGGACACAGCCGGAAGGACTCCGTACGGAACTCCCCT CAAAGTAATCGAGCTGGGAGTAACGCATGTGCCCCAGGATGTATTTGAAATGTATTTGGATGAGATTAGCTCTCGGTATACAGCTGAAACCTACAGTTTA CTCAAACACAATTGTAACAATTTTAGCAACGAGGTTGCACAGTTTTTGGTCGGAGCATCCATTCCAGATTACATTCTTCAGCTTCCTAATGAAGTTATGA GCAGTCCGATGGGCTCTCTCATATTGCCCATGATACAGAATCTAGAGGCGACAATGAGAGCTGGGGCTGTACCGCAAGTACCGCAATTCAGGCCTACTGC GGCCAGTCAGCAAGCACCGGCTAGCAATGGAGCTGCATCATCCGGTAATTCAGGAGAGAAGAAGCCATCTGTGAACTCTGTGCCTCCTGCTGTTGAGCCT ACAAAAGAGAAGGAGAAAGCTTCGCCTTCTGCGGCTGATCCTCTTGGGGCTGCAAGAAGCAAAGTGCAGGAAGAGATCGGTAGAGAATTTGCTGCGATCA TGGCTCAGGGATCCCTGCGGGCAAGTGAGGCTGCTGCTCTTGCGACGAGGAGAGTGATGCAGAGATATGGGAGTCTGAATGTTGGATCGCCGCGTAGTTA A
AA sequence Show only first row Show all	>Lus10038168 pacid=23158214 polypeptide=Lus10038168 locus=Lus10038168.g ID=Lus10038168.BGIv1.0 annot-version=v1.0 MEEEGHRVTLNVYDLSQGLARQLSTTFLGKAIEGIWHTGVSVYGNEYYFGGGIQKDTAGRTPYGTPLKVIELGVTHVPQDVFEMYLDEISSRYTAETYSL LKHNCNNFSNEVAQFLVGASIPDYILQLPNEVMSSPMGSLILPMIQNLEATMRAGAVPQVPQFRPTAASQQAPASNGAASSGNSGEKKPSVNSVPPAVEP TKEKEKASPSAADPLGAARSKVQEEIGREFAAIMAQGSLRASEAAALATRRVMQRYGSLNVGSPRS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07090			PPPDE putative thiol peptidase...		Lus10038168 [exp]	0	1
AT4G30480		TPR1, AtTPR1	tetratricopeptide repeat 1, Te...		Lus10035117 [exp]	2.4	0.8936
AT3G12050			Aha1 domain-containing protein...		Lus10021072 [exp]	3.3	0.9131
AT1G76060		EMB1793	EMBRYO DEFECTIVE 1793, LYR fam...		Lus10005621 [exp]	3.5	0.8793
AT1G16810			unknown protein		Lus10026960 [exp]	5.3	0.8941
AT5G12020		HSP17.6II	17.6 kDa class II heat shock p...		Lus10026453 [exp]	5.7	0.8985
AT1G11840		ATGLX1	glyoxalase I homolog (.1.2.3.4...		Lus10002943 [exp]	7.2	0.8784
AT1G07400			HSP20-like chaperones superfam...		Lus10016456 [exp]	8.5	0.9044
AT2G03690			coenzyme Q biosynthesis Coq4 f...		Lus10026673 [exp]	9.4	0.8806
AT5G47120		ATBI-1, ATBI1	ARABIDOPSIS BAX INHIBITOR 1, B...		Lus10000097 [exp]	10.5	0.8360
AT1G54115		ATCCX4	cation calcium exchanger 4 (.1...		Lus10015668 [exp]	10.6	0.8658

Compare expression of checked genes

Lus10038168 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.