Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48800 483 / 1e-159 Phototropic-responsive NPH3 family protein (.1) AT3G08570 379 / 7e-120 Phototropic-responsive NPH3 family protein (.1) AT3G24800 285 / 3e-87 PRT1 proteolysis 1 (.1) AT3G50840 260 / 5e-76 Phototropic-responsive NPH3 family protein (.1) AT5G67385 260 / 7e-76 Phototropic-responsive NPH3 family protein (.1) AT2G47860 261 / 1e-75 SETH6 Phototropic-responsive NPH3 family protein (.1.2.3) AT1G03010 260 / 2e-75 Phototropic-responsive NPH3 family protein (.1) AT5G13600 258 / 5e-75 Phototropic-responsive NPH3 family protein (.1) AT2G30520 243 / 1e-69 RPT2 ROOT PHOTOTROPISM 2, Phototropic-responsive NPH3 family protein (.1.2.3) AT4G37590 241 / 4e-69 MEL1, NPY5 NAKED PINS IN YUC MUTANTS 5, MAB4/ENP/NPY1-LIKE 1, Phototropic-responsive NPH3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025930 [exp] 670 / 0 AT3G24800 287 / 2e-93 proteolysis 1 (.1) Lus10025928 [exp] 602 / 0 AT5G48800 925 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10014858 [exp] 338 / 1e-105 AT5G67385 489 / 2e-168 Phototropic-responsive NPH3 family protein (.1) Lus10019522 [exp] 269 / 2e-78 AT3G44820 781 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10013799 [exp] 264 / 2e-76 AT5G03250 672 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10011532 [exp] 248 / 1e-72 AT5G67385 427 / 2e-144 Phototropic-responsive NPH3 family protein (.1) Lus10029443 [exp] 245 / 4e-72 AT1G03010 496 / 4e-172 Phototropic-responsive NPH3 family protein (.1) Lus10019297 [exp] 247 / 3e-71 AT4G37590 569 / 0.0 NAKED PINS IN YUC MUTANTS 5, MAB4/ENP/NPY1-LIKE 1, Phototropic-responsive NPH3 family protein (.1) Lus10005943 [exp] 248 / 5e-71 AT1G03010 881 / 0.0 Phototropic-responsive NPH3 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G242300 [exp] 533 / 3e-179 AT5G48800 899 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.016G139900 [exp] 413 / 6e-133 AT3G08570 723 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.002G241900 [exp] 306 / 2e-94 AT3G24800 314 / 2e-103 proteolysis 1 (.1) Potri.007G053200 [exp] 298 / 7e-90 AT5G67385 807 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.002G209700 [exp] 289 / 6e-86 AT1G03010 847 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.001G357100 [exp] 285 / 1e-84 AT1G30440 971 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.014G133500 [exp] 284 / 4e-84 AT1G03010 843 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.007G112600 [exp] 285 / 5e-84 AT5G64330 989 / 0.0 ROOT PHOTOTROPISM 3, NON-PHOTOTROPIC HYPOCOTYL 3, Phototropic-responsive NPH3 family protein (.1.2) Potri.017G048200 [exp] 275 / 1e-80 AT5G64330 993 / 0.0 ROOT PHOTOTROPISM 3, NON-PHOTOTROPIC HYPOCOTYL 3, Phototropic-responsive NPH3 family protein (.1.2) Potri.011G091100 [exp] 272 / 9e-80 AT1G30440 924 / 0.0 Phototropic-responsive NPH3 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0006 [flax] [poplar] C1 PF00569 [flax] [poplar] ZZ Zinc finger, ZZ type CL0033 [flax] [poplar] POZ PF00651 [flax] [poplar] BTB BTB/POZ domain CL0033 [flax] [poplar] PF03000 [flax] [poplar] NPH3 NPH3 family
Representative CDS sequence Show only first row Show all	>Lus10038169 pacid=23158215 polypeptide=Lus10038169 locus=Lus10038169.g ID=Lus10038169.BGIv1.0 annot-version=v1.0 ATGGAGAATCCTCCAGCTGTCGGTTCCGTAGCGGCGACAGAAGAGGAGGAGGAGATTCTTGATGCTTTCACTTGTTGTATTTGCTTGGATCTTCTGTACA AGCCTGTAGTGCTTGCTTGTGGTCACATGGCCTGTTTCTGGTGTGTCCATCATTCCATGAGCTTCCGTGATCAGTCCCATTGTCCAATTTGCAGAAACCC TTACCGTCATTTTCCAGCCATCTGTGTCACTCTCCATTTCTTGCTCTTGAAGTTGTACCCCCTTGCCTCCAAGAGAAGAGAAGGACAAGTTCTTGAGGAT GAAAAGGGGAAAATGGTTTTCTCACCACAGTATGATAGTAATTTGGGCACAACAAATGCTACAAAGGATCTTGCACAATCCTCGTCCTCTGGTGGAGATT CTAACATTGGATCGGGTGGGAATGAGGAGTCGCCTACAAGTCAAGTGCAACCGAGAGCCTCTTCAACTGGCAATGACGAGTCGCTTTCAATAGATGATGT GCGTTGTGTCGCATGCAAGGAACTGCTTTTTCTTTCTGTAGTCCTCAATTGTGGCCATGCTTTCTGTGAGTGTTGCATTGTACGGCCAGTAAATGGTGCA ATCAAATGTCACGTGTGTCAGAGTTTGCACCCAAGAGGTACCCTGAAAGTTTGTTTGGAGTTTGATCGATTCTTGGAAGATAGATTTCCCAAGGAGTATA AATCCAGAAGAGAAATTGCTCAACCTGCTCATGTTATGACTGAGAGCCCAACTGCTGGTTTGGGGGAAAGTAGTAAAGAGGGCGTGGCTCCATTACCAAC AGCAGAATCGAAGATTCATAAAGGAGTTGGATGTGATGCTTGTGGAATGTGTCCAATCATGGGGGAGAGATACAGATGCATAGATTGTTTGGAGGCAATA GGGTTTGACCTGTGCGGAGAATGCTACAACTCGAGGTCAAAGCTTCCAGGTCGGTTTAATCAACAGCACACGGAAGAGCACAAGTTTGAGCATGTAGGAC TGCTGCGGAGGGGGATAATGATGATGATGGATGCACATATGATAAGACAGTTGAGAGGTGACGAGTCTGGTGGTGGTGGTGGTGCTCGGACTGATACCCA AGAGCAAACTGCCAGAAACAATTTATTATATTCATCTGAGGAGGATGATGATGATGGTGATGATGATGAAGAGGAAGATGAGATTGCGGGATCGAAGTGG TCAGAGCCGAGAGGTCCTGAACGCTGGATTTTCAGAGATGTCCCTAGTGACTTCACCATAGAAGTTGACGGAAGCACATTTGCATTGCACAAGTTCCCGA TCGTGTCTCGAAGTGGGAGGATCAGGAAGTTGGTGGCAGAGCACAGGGATTCAGACATCTCAAGGGTTGAGCTTCTGAATCTACCAGGAGGGGCAGAGAC ATTCGAGCTGGCTGCCAAATTCTGTTACGGCATCAACTTCGAGATAACATCTGCAAACGTCGCCCAGCTCTGCTGTGTATCTGACTACCTCGAAATGACG GAGGACTACTCACACGATAACCTCGGATCTCGAGCTGAAGAGTATCTAGACAGTGTTGTCTGCAAAAACCTTGAGCTTTGTGTCGAAGTTCTGCAGCAAT GTGAGAGCCTCCTCCCCCTGGCAGACGAGCTGAAAATAGTCAGCCGTTGCATCGACTCGATAGCATCGAAAGCCTGCGCTGAACAAATCGCGTCCAGCTT CTCGAGACTGGAGTACAGCAGCTCGGGAAGACTCCACATGAACAAGCAAGCCAAATGTGAAGGGGATTGGTGGATTGAGGATCTCTCTGTGCTCAGGATT GATCTTTACCAAAGGGTGATCACGGCCATGAAATGTCGAGGGGTTCGCCCCGAGAGCATTGGGACATCACTTGTGAGCTATGCTCAGAAGGAGCTGACGG CTAAGAAATCTAGCCAGACTAAATTGGCTGATCACATGGTCTCGACGACAAGCCAAGAGATCAGGCTTGTCGTTGAGACCATCGTTAGCTTGTTGCCTGT GGAGAAACTCGCTGTCCCGATCAGTTTCCTGTTTGGTCTTCTGAGGAGTGCTGTGATGCTTGATTGTAGTGTTTCTTGTAGGCTTGACTTGGAGAGGCGA ATTGGGTCGCAGCTTGACATTGCTATGATGGTTCCGTGTTTCAGTCTGATCATAGCCCGCATTCGCCCTCTCAGACCGCGCTGTTTAAGGTGTCCAAGTT GGTGGACAATTACCTCGCTGAAATCGCTCCAGATGCTAATCTCAAGCTCTCCAAAGGCATTGCCTTCTCATGCCCGTACCCTTCATGATGGATTGTATCG CGCTATCGACATATATCTCAAAGCGCATCAAGGATTACCTGAGACAGACAGGAAGAGGGTATGCAAGCTGATAGACTTCCAGAAGCTGTCTCAGGAAGCC GGGGCTCACGCCGCACAGAACGAAAGACTTCCACTTCAGTCAATAGTACAAGTGCTTTATTTTGAACAGGTCAGGCTGAGAAATGCACTATGCAGCTCCT ACGGTGGTGAACATATCGATCCGGATCATAAGCCAATGATGCAGCACCACCAGTCATGGAGGGCTAGCAGTGGTGCATTCAGCGCGGCCATGTCTCCCCG AGACAACTATGCTTCCCTGAGGCGAGAAAACCGAGAGCTGAAGCTTGAGCTGGCTCGGATGAGGATGAGACTTAACGATCTGGAGAAGGATCACGTTTGT ATGAAGAGGGATATGCAGAAGTCCGGTTCTCGCAAGTTCATGACTTCTTTCTCTAAGAAAATAGGTAAGCTGAACTTCTTTGGCCATAGTTACTCGAGGG GATCTACCTCGCCTTCAAAGCAGTCTCAGAGAACTGACTCTAAGGTGATTGAGAGAACATGTGCAAGTACTGACTAG
AA sequence Show only first row Show all	>Lus10038169 pacid=23158215 polypeptide=Lus10038169 locus=Lus10038169.g ID=Lus10038169.BGIv1.0 annot-version=v1.0 MENPPAVGSVAATEEEEEILDAFTCCICLDLLYKPVVLACGHMACFWCVHHSMSFRDQSHCPICRNPYRHFPAICVTLHFLLLKLYPLASKRREGQVLED EKGKMVFSPQYDSNLGTTNATKDLAQSSSSGGDSNIGSGGNEESPTSQVQPRASSTGNDESLSIDDVRCVACKELLFLSVVLNCGHAFCECCIVRPVNGA IKCHVCQSLHPRGTLKVCLEFDRFLEDRFPKEYKSRREIAQPAHVMTESPTAGLGESSKEGVAPLPTAESKIHKGVGCDACGMCPIMGERYRCIDCLEAI GFDLCGECYNSRSKLPGRFNQQHTEEHKFEHVGLLRRGIMMMMDAHMIRQLRGDESGGGGGARTDTQEQTARNNLLYSSEEDDDDGDDDEEEDEIAGSKW SEPRGPERWIFRDVPSDFTIEVDGSTFALHKFPIVSRSGRIRKLVAEHRDSDISRVELLNLPGGAETFELAAKFCYGINFEITSANVAQLCCVSDYLEMT EDYSHDNLGSRAEEYLDSVVCKNLELCVEVLQQCESLLPLADELKIVSRCIDSIASKACAEQIASSFSRLEYSSSGRLHMNKQAKCEGDWWIEDLSVLRI DLYQRVITAMKCRGVRPESIGTSLVSYAQKELTAKKSSQTKLADHMVSTTSQEIRLVVETIVSLLPVEKLAVPISFLFGLLRSAVMLDCSVSCRLDLERR IGSQLDIAMMVPCFSLIIARIRPLRPRCLRCPSWWTITSLKSLQMLISSSPKALPSHARTLHDGLYRAIDIYLKAHQGLPETDRKRVCKLIDFQKLSQEA GAHAAQNERLPLQSIVQVLYFEQVRLRNALCSSYGGEHIDPDHKPMMQHHQSWRASSGAFSAAMSPRDNYASLRRENRELKLELARMRMRLNDLEKDHVC MKRDMQKSGSRKFMTSFSKKIGKLNFFGHSYSRGSTSPSKQSQRTDSKVIERTCASTD

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G48800			Phototropic-responsive NPH3 fa...		Lus10038169 [exp]	0	1
AT2G47500			P-loop nucleoside triphosphate...		Lus10009851 [exp]	2.4	0.8859
AT5G54390		ATAHL, AHL	HAL2-like (.1)		Lus10038597 [exp]	2.4	0.8638
AT5G42560			Abscisic acid-responsive (TB2/...		Lus10034519 [exp]	5.5	0.8528
AT2G47500			P-loop nucleoside triphosphate...		Lus10010301 [exp]	6.5	0.8654
AT5G54390		ATAHL, AHL	HAL2-like (.1)		Lus10037888 [exp]	17.8	0.8585
AT2G21520			Sec14p-like phosphatidylinosit...		Lus10023546 [exp]	19.9	0.8354
AT4G27060		CN, SPR2, TOR1	TORTIFOLIA 1, SPIRAL 2, CONVOL...		Lus10040047 [exp]	24.5	0.8080
AT1G49890		QWRF2	QWRF domain containing 2, Fami...		Lus10033792 [exp]	25.2	0.8448
AT5G23860		TUB8, b-TUB	tubulin beta 8 (.1.2)		Lus10027476 [exp]	25.6	0.8496
AT1G62020			Coatomer, alpha subunit (.1)		Lus10037539 [exp]	26.1	0.8413

Compare expression of checked genes

Lus10038169 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.