Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24820 162 / 2e-51 BSD domain-containing protein (.1) AT1G69030 100 / 6e-26 BSD domain-containing protein (.1) AT1G26300 98 / 7e-25 BSD domain-containing protein (.1.2) AT5G65910 49 / 4e-07 BSD domain-containing protein (.1) AT3G49800 44 / 2e-05 BSD domain-containing protein (.1) AT1G10720 39 / 0.0007 BSD domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025929 [exp] 338 / 2e-120 AT3G24820 161 / 2e-50 BSD domain-containing protein (.1) Lus10036831 [exp] 109 / 3e-29 AT1G26300 305 / 2e-103 BSD domain-containing protein (.1.2) Lus10019194 [exp] 105 / 3e-27 AT1G26300 294 / 8e-99 BSD domain-containing protein (.1.2) Lus10011556 [exp] 48 / 1e-06 AT3G49800 372 / 3e-126 BSD domain-containing protein (.1) Lus10019271 [exp] 48 / 1e-06 AT3G49800 370 / 3e-125 BSD domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G242200 [exp] 185 / 2e-60 AT3G24820 167 / 4e-53 BSD domain-containing protein (.1) Potri.008G111900 [exp] 106 / 3e-28 AT1G69030 281 / 6e-94 BSD domain-containing protein (.1) Potri.010G137900 [exp] 97 / 1e-24 AT1G26300 241 / 2e-78 BSD domain-containing protein (.1.2) Potri.014G008400 [exp] 50 / 2e-07 AT3G49800 332 / 1e-109 BSD domain-containing protein (.1) Potri.007G006400 [exp] 46 / 4e-06 AT3G49800 288 / 1e-93 BSD domain-containing protein (.1) Potri.014G014200 [exp] 45 / 9e-06 AT1G10720 223 / 6e-68 BSD domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03909 [flax] [poplar] BSD BSD domain
Representative CDS sequence Show only first row Show all	>Lus10038170 pacid=23158178 polypeptide=Lus10038170 locus=Lus10038170.g ID=Lus10038170.BGIv1.0 annot-version=v1.0 ATGAACTGGAAGTCATGGTTCGGAGCTCGCAGCTCAAGCGCTAACCCAACGCACCGTCAATCGACAGACGAAGATATTCTTGGACTTACCCAACAATTGA TAGATCGCATCAAGTCCTTCAATCTTGATACCTTCAAGAACTTCCCACTCCATGATGACAGAAATGCAGAAGCTACCTTCGGCGACGAAACTGAAGGAAT CGAAGCAGCTAACATTCATAGAGATCTCTCTGAATGGCAGGAAAGACATGCTACTCTTGCTCTTTCCAAATTCAAGGAACTTTCACAGCTTAGATTCAAG TTATGCCCTCGCCACTTGAAAGAACGAGACTTTTGGAGGATCTATTTTACACTTGTCAAGGCCGACATAGTTGAGTATGAGCTACGGGCCATCCAATTAG CTAAAGTTCAGAAGATGGCAACAGAGACTAGAAAATCTTCACAGGCCATCCCAGTTGAGGTTGAAATGGCAGAGACAGTGAAATCAACGAGCATACAACC ACCAACTCCATGA
AA sequence Show only first row Show all	>Lus10038170 pacid=23158178 polypeptide=Lus10038170 locus=Lus10038170.g ID=Lus10038170.BGIv1.0 annot-version=v1.0 MNWKSWFGARSSSANPTHRQSTDEDILGLTQQLIDRIKSFNLDTFKNFPLHDDRNAEATFGDETEGIEAANIHRDLSEWQERHATLALSKFKELSQLRFK LCPRHLKERDFWRIYFTLVKADIVEYELRAIQLAKVQKMATETRKSSQAIPVEVEMAETVKSTSIQPPTP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G24820			BSD domain-containing protein ...		Lus10038170 [exp]	0	1
AT5G40480		EMB3012	embryo defective 3012 (.1)		Lus10002517 [exp]	14.3	0.7123
AT1G71790			Subunits of heterodimeric acti...		Lus10003086 [exp]	14.9	0.7764
AT5G27430			Signal peptidase subunit (.1)		Lus10040138 [exp]	18.4	0.7589
AT1G71340		AtGDPD4	glycerophosphodiester phosphod...		Lus10039158 [exp]	22.2	0.7710
AT1G09850		XBCP3	xylem bark cysteine peptidase ...		Lus10024296 [exp]	26.2	0.7459
AT3G55020			Ypt/Rab-GAP domain of gyp1p su...		Lus10036500 [exp]	32.5	0.7412
AT1G79230		STR1, ATRDH1, A...	ARABIDOPSIS THALIANA RHODANESE...		Lus10031177 [exp]	34.6	0.7562
AT3G58670			Protein of unknown function (D...		Lus10033603 [exp]	43.6	0.7530
AT2G27285			Coiled-coil domain-containing ...		Lus10038787 [exp]	43.8	0.7470
AT1G09980			Putative serine esterase fami...		Lus10038351 [exp]	44.4	0.7380

Compare expression of checked genes

Lus10038170 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.