Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06980 42 / 4e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025927 [exp] 286 / 1e-99 AT1G06980 43 / 4e-05 unknown protein Lus10020386 [exp] 66 / 4e-13 AT1G06980 44 / 3e-05 unknown protein Lus10009561 [exp] 64 / 1e-12 AT1G06980 44 / 1e-05 unknown protein Lus10026092 [exp] 62 / 4e-12 ND 42 / 5e-05 Lus10002327 [exp] 59 / 6e-11 AT1G29195 47 / 1e-06 unknown protein Lus10006211 [exp] 47 / 9e-07 AT1G06980 39 / 9e-04 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G242400 [exp] 111 / 7e-30 AT1G06980 45 / 9e-06 unknown protein Potri.003G179600 [exp] 77 / 2e-17 ND / Potri.002G217100 [exp] 63 / 4e-12 ND / Potri.001G048400 [exp] 56 / 7e-10 ND / Potri.010G046225 [exp] 50 / 1e-07 ND / Potri.008G186700 [exp] 49 / 3e-07 AT5G50090 41 / 1e-04 unknown protein Potri.014G170000 [exp] 46 / 3e-06 ND / Potri.019G123900 [exp] 40 / 0.0003 AT2G30230 159 / 3e-50 unknown protein Potri.013G153100 [exp] 39 / 0.0005 AT2G30230 189 / 5e-62 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10038171 pacid=23158201 polypeptide=Lus10038171 locus=Lus10038171.g ID=Lus10038171.BGIv1.0 annot-version=v1.0 ATGAAGAAAGCTAAAACCTTGGAGGAGGAATCAGGAATCCTGAAACTCGTACATCCGGGCCGCCACGTCGAATTCCACAGGCAAACCATTTACGCATCCC AAGTTATGATCCAGAATCCTAGACACTCTGTCGCTCTGCCTCTAGTATTCCAGAAACCATGGCTCGTAGTTCGACCTGACTCTCTACTTCATCCTGGCCA AGTATTTCTCCTTGTCCCCAACTCTACCCTCTACCAATTGCTAAAATCTCACAGGGAAACCCGCAATTTCCACCCTCATCATCATCATCAGCATGTTGGC AATGGCGGTAGCAATGTTAATGGGTCGTTTGAAGAAGAAATTAGGCTTAGCTCTTCCTTTTATCACAGGAATGCCCAGTTCTGCACTGGGAGTTTTCATG GGAACTGTTATGGTGGATTTGAGAGGGAAGATCATGTTACTCAGAATCGGCAAGTTGACAAGCTGAAATCTTGTTTGAGATATCCTGACAGCCCTCGGAG ATTGCTTGACCTGAGAGTCAACTTTGCATTTGCTTGTTCAAAAGGATAG
AA sequence Show only first row Show all	>Lus10038171 pacid=23158201 polypeptide=Lus10038171 locus=Lus10038171.g ID=Lus10038171.BGIv1.0 annot-version=v1.0 MKKAKTLEEESGILKLVHPGRHVEFHRQTIYASQVMIQNPRHSVALPLVFQKPWLVVRPDSLLHPGQVFLLVPNSTLYQLLKSHRETRNFHPHHHHQHVG NGGSNVNGSFEEEIRLSSSFYHRNAQFCTGSFHGNCYGGFEREDHVTQNRQVDKLKSCLRYPDSPRRLLDLRVNFAFACSKG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G06980			unknown protein		Lus10038171 [exp]	0	1
AT2G37210		LOG3	LONELY GUY 3, lysine decarboxy...		Lus10023190 [exp]	1.0	0.8504
AT5G02440			unknown protein		Lus10040828 [exp]	2.2	0.8257
AT1G10200	LIM	WLIM1, SF3	WLIM1, GATA type zinc finger t...		Lus10007748 [exp]	2.4	0.8461
AT5G07800			Flavin-binding monooxygenase f...		Lus10003474 [exp]	3.5	0.8189
AT4G18260			Cytochrome b561/ferric reducta...		Lus10007333 [exp]	3.9	0.8380
AT1G01900		SBTI1.1, ATSBT1...	subtilase family protein (.1)		Lus10041382 [exp]	4.5	0.8323
AT1G04360			RING/U-box superfamily protein...		Lus10000710 [exp]	6.0	0.8048
AT5G15240			Transmembrane amino acid trans...		Lus10030469 [exp]	7.4	0.8064
AT4G18260			Cytochrome b561/ferric reducta...		Lus10020757 [exp]	8.5	0.8087
AT5G53890		AtPSKR2	phytosylfokine-alpha receptor ...		Lus10005403 [exp]	11.7	0.7347

Compare expression of checked genes

Lus10038171 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.