Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48740 939 / 0 Leucine-rich repeat protein kinase family protein (.1) AT1G67720 377 / 1e-116 Leucine-rich repeat protein kinase family protein (.1) AT1G49100 364 / 2e-112 Leucine-rich repeat protein kinase family protein (.1) AT2G14440 364 / 3e-112 Leucine-rich repeat protein kinase family protein (.1) AT3G21340 363 / 1e-111 Leucine-rich repeat protein kinase family protein (.1) AT2G37050 363 / 2e-111 Leucine-rich repeat protein kinase family protein (.1.2.3) AT2G14510 361 / 2e-111 Leucine-rich repeat protein kinase family protein (.1) AT2G28990 358 / 4e-110 Leucine-rich repeat protein kinase family protein (.1) AT2G29000 357 / 7e-110 Leucine-rich repeat protein kinase family protein (.1) AT4G29990 353 / 3e-108 Leucine-rich repeat transmembrane protein kinase protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025926 [exp] 1476 / 0 AT5G48740 1094 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10038174 [exp] 1039 / 0 AT5G48740 793 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10025849 [exp] 364 / 4e-112 AT4G29990 803 / 0.0 Leucine-rich repeat transmembrane protein kinase protein (.1) Lus10036935 [exp] 359 / 6e-110 AT1G67720 1303 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10037051 [exp] 358 / 6e-107 AT1G67720 1293 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10015057 [exp] 350 / 3e-106 AT2G37050 1316 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3) Lus10019907 [exp] 344 / 2e-104 AT2G37050 1337 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3) Lus10023166 [exp] 341 / 7e-103 AT2G37050 1323 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3) Lus10019237 [exp] 292 / 4e-85 AT2G37050 464 / 1e-148 Leucine-rich repeat protein kinase family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G242700 [exp] 1170 / 0 AT5G48740 1110 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.010G052800 [exp] 369 / 1e-113 AT1G67720 1330 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.016G084900 [exp] 360 / 1e-110 AT2G37050 1276 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3) Potri.008G181200 [exp] 350 / 1e-106 AT1G67720 1339 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.019G094600 [exp] 341 / 1e-103 AT4G29990 636 / 0.0 Leucine-rich repeat transmembrane protein kinase protein (.1) Potri.019G094300 [exp] 339 / 1e-102 AT4G29990 628 / 0.0 Leucine-rich repeat transmembrane protein kinase protein (.1) Potri.019G094700 [exp] 338 / 2e-102 AT4G29990 652 / 0.0 Leucine-rich repeat transmembrane protein kinase protein (.1) Potri.007G004700 [exp] 320 / 3e-95 AT2G37050 466 / 2e-149 Leucine-rich repeat protein kinase family protein (.1.2.3) Potri.019G094200 [exp] 283 / 4e-86 AT4G29990 452 / 1e-150 Leucine-rich repeat transmembrane protein kinase protein (.1) Potri.006G132100 [exp] 293 / 1e-85 AT2G37050 1317 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10038172 pacid=23158479 polypeptide=Lus10038172 locus=Lus10038172.g ID=Lus10038172.BGIv1.0 annot-version=v1.0 ATGACCGACTACGTGGATCCAGCAACCTCAATCTCAAGTAGATCCGACGGAAATTTCATAAACAGAGGAAACACCACAACTGTGGCGGACCTCCCACTCC GTTTCTTCCCCGATTCCGGCGGTGGCGGTGGCCGGAACTGTTACAGCATTCATCTGGCTAACATGTCATCCTCGTTGCTTCTAGTCAGAGAAAAATTCTT CTACGGAAATTACGACGGGGTTGAGAACCCGCCGGCATTCTCTGTTTCACTAGGAACTGCAATCACTTCCTCTGTAAACCTTACTGCTGCTGATCCCTGG ATCGAAGAGGTGGTTTGGCCTGTTGCTGCTGCTGTTGGTAAGGAAGTTGTGACTGTTTCTTTGTGCTTGATCCCCATTCCTGGCGGTGGAGCTCCTGTCA TTTCGTCAATCGAAGTCCGGCTACTTCCGCCGGGAGCTTACGGTGGCGGTGGCGTGGGAGATTGGGCCAATAAGTCGCTCCGGAAGGCGTATCGGATCAA TAGTGGATACACCAATGGATCCCTAACATACCCTGCGGATCCATACGATAGGATATGGAATGCTGACGAGAAGTACATTCAAAAAAATATCTCATCCGCA TTCAACGTCTACCTAGCCTTGAACACATCAAACGTCCCAGAGAATCCACCCATTTCGATTCTTCAAACTGCTCGAGTTCTGGCGAGGAGCGATGTCTTAA CCTACAATCTCCCACTTGGTGTCCTTGGGGACTACTACATTCTACTCTATTTTGCTGGGATACTCCCTGTCTCACCTGCATTTGATGTTTTGGTCAATGG AGACATGGTCGAGCTCGACTATACGGTTCAAATGGGCGACGCGAGTGTTCTATACCTGACGCGCAAGGCCATCAATAACCTCAATCTCACGCTCAGGAGC ACCAGGTATTATCCACAGGTCAATGGGATTGAGGTTTATCATATTGTTGACATTCCCTTGGAAGCTTCCTCCACAACAGTTTCAGCACTTCAAGTTATCC AGCAGGCTACTGGGTTGGATCTGGGATGGGAAGATGACCCTTGTTCTCCAACACAATGGGCTCATGTTGGATGTGAAGGAAGCCTAGTTACATCTTTGGA GCTTTCAGATGTCAATCTGAGGAACCTGAGCTTCAATCATCTAACGTCCTTCGGAGGTGAACTGGATAAATTGGTTAGCCTTCAAGTTCTGGACCTGCAG AATAACAGCTTAGAAGGAGTGGTTCCGCAGAGCTTGGGAGAGATGGAGAACCTTCACCTCCTCTCATTACCGCTCGTGCAATGGATCCTTCAGGAACCTG GAAAACAACAAGCTGCAAGGAACCTGGAAAACAACAAGCTGCAAGGAACCCTTCCAGAGTCTTTGAACCGAGAAAGTTTGAACGTCAGGGCATCAGGGAA TCTGTGTGTTTCTTTCTCTGCAACAACCTGCAACGAAGCCTCCTTGGACCCTTCCATCGAGATGCCACAAGTTACAATCTTAGCCAAGAATAAACCGGAC AACAAAAACCATGTAGCAATCATACTTGGGGCAGCTGGAAGTTCCTTGCTTGCTCTCATCTTCTGTTCGATTGCACTACCCTTGTACAGTAGGAAAGAGA GAACTGAAGTTCCTTTTGCACAAAGTGAAGGAACAGATATGAAGACCTGGAATTCAGCCAGAGTCTTTTCATACAAGGAAATTAAGACAGCAACAAACAG TTTTAAGGAAGTCATTGGCCGCGGCAGCTTTGGTTCAGTGTACCTTGGGAAGCTTCCTGATGGGAAACAGGTGGCTGTCAAAGTTAGGTTTGATAGAAGT CAACTCGGAGCTGATTCTTTCATCAATGAGGTGCATCTCCTGTCACGAATTCCTCATCAGAATCTAGTGTGTCTAGAAGGATTCTGTTACGAATCAAAGC AGCAGATACTAGTTTACGAGTATCTATCTAGTGGATCTCTGGCTGACCACCTTTATGGATCAAAGAGTAAAAAAATATCACTAAGCTGGGTTCGCAGGCT GAAGATTGCAGTTGATGCTGCAAAAGGATTGGAATATCTGCACAATGGAAGCGATCCACGAATCATCCACCGCGACGTGAAATGCAGCAACATACTGCTG GACAAAGACATGAATGCCAGGGTGTGTGACTTTGGTCTTTCCAAGCAACTTGTGCAGTCTGATGCAAGTCATGTCACTACTATGGTCAAGGGCACTGCAG GCTACTTGGATCCTGAGTACTACTCTACCCAACAGCTGACGGAGAAAAGTGACATCTACAGCTTTGGAGTAGTTCTTCTGGAGTTGATTTGCGGGCGAGA GCCGTTGCGCCACACGGGAACTCCTGACTCTTTCAATCTGGTTTTATGGGCTAAGCCATACTTACAAGCTGGAGCATTAGAGATAGTGGATGAGAATATG AAGGAGACTTTCGACGTGGAGAGTATGAGAAAGGCAGCGATGGTTGCTGTAAGGTGTGTAGACAGAGATGCATCAGAGAGACCAAATATTGCTCAGGTCT TGGCTGAGCTCAAAGAAGCCTACAGCATTCAGCTCTCTTATCTGGCTTCTTTTGATTTGTAA
AA sequence Show only first row Show all	>Lus10038172 pacid=23158479 polypeptide=Lus10038172 locus=Lus10038172.g ID=Lus10038172.BGIv1.0 annot-version=v1.0 MTDYVDPATSISSRSDGNFINRGNTTTVADLPLRFFPDSGGGGGRNCYSIHLANMSSSLLLVREKFFYGNYDGVENPPAFSVSLGTAITSSVNLTAADPW IEEVVWPVAAAVGKEVVTVSLCLIPIPGGGAPVISSIEVRLLPPGAYGGGGVGDWANKSLRKAYRINSGYTNGSLTYPADPYDRIWNADEKYIQKNISSA FNVYLALNTSNVPENPPISILQTARVLARSDVLTYNLPLGVLGDYYILLYFAGILPVSPAFDVLVNGDMVELDYTVQMGDASVLYLTRKAINNLNLTLRS TRYYPQVNGIEVYHIVDIPLEASSTTVSALQVIQQATGLDLGWEDDPCSPTQWAHVGCEGSLVTSLELSDVNLRNLSFNHLTSFGGELDKLVSLQVLDLQ NNSLEGVVPQSLGEMENLHLLSLPLVQWILQEPGKQQAARNLENNKLQGTLPESLNRESLNVRASGNLCVSFSATTCNEASLDPSIEMPQVTILAKNKPD NKNHVAIILGAAGSSLLALIFCSIALPLYSRKERTEVPFAQSEGTDMKTWNSARVFSYKEIKTATNSFKEVIGRGSFGSVYLGKLPDGKQVAVKVRFDRS QLGADSFINEVHLLSRIPHQNLVCLEGFCYESKQQILVYEYLSSGSLADHLYGSKSKKISLSWVRRLKIAVDAAKGLEYLHNGSDPRIIHRDVKCSNILL DKDMNARVCDFGLSKQLVQSDASHVTTMVKGTAGYLDPEYYSTQQLTEKSDIYSFGVVLLELICGREPLRHTGTPDSFNLVLWAKPYLQAGALEIVDENM KETFDVESMRKAAMVAVRCVDRDASERPNIAQVLAELKEAYSIQLSYLASFDL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G48740			Leucine-rich repeat protein ki...		Lus10038172 [exp]	0	1
AT5G48740			Leucine-rich repeat protein ki...		Lus10038174 [exp]	1.4	0.9551
AT5G48740			Leucine-rich repeat protein ki...		Lus10025926 [exp]	2.8	0.9333
AT3G20640	bHLH	bHLH123	basic helix-loop-helix (bHLH) ...		Lus10038550 [exp]	3.0	0.9076
AT5G09730		ATBXL3, XYL3, B...	beta-xylosidase 3 (.1)		Lus10025036 [exp]	4.5	0.9048
					Lus10005454 [exp]	4.9	0.9064
AT4G22285			Ubiquitin C-terminal hydrolase...		Lus10027746 [exp]	10.2	0.8446
AT3G15220			Protein kinase superfamily pro...		Lus10042862 [exp]	12.4	0.8839
AT5G01180		ATPTR5	ARABIDOPSIS THALIANA PEPTIDE T...		Lus10035516 [exp]	14.9	0.9046
AT1G53165		ATMAP4KALPHA1 ,...	Protein kinase superfamily pro...		Lus10028163 [exp]	16.4	0.8924
AT5G59190			subtilase family protein (.1)		Lus10000018 [exp]	17.3	0.7905

Compare expression of checked genes

Lus10038172 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.