Plant FIBer expression Database

Lus10038173 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G13150 332 / 2e-115 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10025925
[exp]
396 / 2e-140 AT4G13150 396 / 8e-138 unknown protein
Lus10038175
[exp]
171 / 3e-53 AT4G13150 203 / 8e-64 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G242800
[exp]
345 / 3e-120 AT4G13150 375 / 8e-130 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF09335 SNARE_assoc SNARE associated Golgi protein
Representative CDS sequence
>Lus10038173 pacid=23158256 polypeptide=Lus10038173 locus=Lus10038173.g ID=Lus10038173.BGIv1.0 annot-version=v1.0
ATGGCTGCTGGCTTTGGCCTTTTCATCAGTGAAGAAGCTTTGAACATTTGGGTCGGCATATCTCTGTCACGGATGCTGTCTTTTGATGGAACGTGGCAGT
CTTTCGCTGCATCCTTCTCCAAGAATGCTCCATACATAATGTCTACGGTTATGTGGGTATACTTGGGAGTATGCATCAGTGATATGATACCCTTCTACCT
CGGAAAACTCTTTAAGCACAGCGGAGCATCAAATGATATCTGTGCAAAGCTAGGCATTAGTGAAGAGAAGGTCTTGAGCATCACACGCATTGTACGGAGT
TACGGCAACCTTGCAGGCTTTGTTGAGCGTTTTTCACTGGGAGTGAGAAATCCAACAGCTTTCCTTGCGGGCTCACTGGGTATATCCCCCGAGTGCTTCT
TTGCTGGAGTTTGCTGCGGTGGTTTGATCACACTTTCCATGCAGTTAGCCATTGGATTCCTATTGAGGGAGCGTCCCATGTTTGCTCTGGCCACGGTTGC
TAGTGTAGTGGGAATCTGGACTGTCTTCCCCTATGCCATGGCTGCTTCCACTGCACTGTTCCTCTATCTACGACGTCGTTATTCCTCCTAG
AA sequence
>Lus10038173 pacid=23158256 polypeptide=Lus10038173 locus=Lus10038173.g ID=Lus10038173.BGIv1.0 annot-version=v1.0
MAAGFGLFISEEALNIWVGISLSRMLSFDGTWQSFAASFSKNAPYIMSTVMWVYLGVCISDMIPFYLGKLFKHSGASNDICAKLGISEEKVLSITRIVRS
YGNLAGFVERFSLGVRNPTAFLAGSLGISPECFFAGVCCGGLITLSMQLAIGFLLRERPMFALATVASVVGIWTVFPYAMAASTALFLYLRRRYSS

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G13150 unknown protein Lus10038173
[exp]
0 1
AT5G48370 Thioesterase/thiol ester dehyd... Lus10008740
[exp]
9.8 0.8218
AT4G37380 Tetratricopeptide repeat (TPR)... Lus10000110
[exp]
16.1 0.8403
AT1G10660 unknown protein Lus10029133
[exp]
16.6 0.8239
AT1G54570 Esterase/lipase/thioesterase f... Lus10033848
[exp]
18.5 0.7727
AT3G48560 TZP5, IMR1, ALS... TRIAZOLOPYRIMIDINE RESISTANT 5... Lus10035207
[exp]
25.5 0.7531
AT2G40840 DPE2 disproportionating enzyme 2 (.... Lus10031010
[exp]
34.5 0.7781
AT5G57170 Tautomerase/MIF superfamily pr... Lus10033324
[exp]
34.9 0.8029
AT3G16000 MFP1 MAR binding filament-like prot... Lus10025768
[exp]
36.5 0.8138
AT2G32720 B5 #4, B5#4, AT... ARABIDOPSIS CYTOCHROME B5 ISOF... Lus10010111
[exp]
43.3 0.7556
AT1G06820 CCR2, CRTISO CAROTENOID AND CHLOROPLAST REG... Lus10029347
[exp]
43.5 0.7913

Lus10038173 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.