Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48740 772 / 0 Leucine-rich repeat protein kinase family protein (.1) AT1G67720 321 / 7e-99 Leucine-rich repeat protein kinase family protein (.1) AT2G37050 301 / 2e-91 Leucine-rich repeat protein kinase family protein (.1.2.3) AT1G51850 293 / 7e-89 Leucine-rich repeat protein kinase family protein (.1) AT2G19190 289 / 3e-87 FRK1 FLG22-induced receptor-like kinase 1 (.1) AT1G51830 281 / 6e-86 Leucine-rich repeat protein kinase family protein (.1) AT1G51820 286 / 7e-86 Leucine-rich repeat protein kinase family protein (.1) AT2G14440 285 / 8e-86 Leucine-rich repeat protein kinase family protein (.1) AT1G51800 284 / 3e-85 IOS1 IMPAIRED OOMYCETE SUSCEPTIBILITY 1, Leucine-rich repeat protein kinase family protein (.1) AT2G28970 282 / 3e-85 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025926 [exp] 1097 / 0 AT5G48740 1094 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10038172 [exp] 1024 / 0 AT5G48740 967 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10036935 [exp] 306 / 4e-93 AT1G67720 1303 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10037051 [exp] 308 / 5e-92 AT1G67720 1293 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10019907 [exp] 297 / 1e-89 AT2G37050 1337 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3) Lus10019237 [exp] 293 / 4e-88 AT2G37050 464 / 1e-148 Leucine-rich repeat protein kinase family protein (.1.2.3) Lus10015057 [exp] 292 / 1e-87 AT2G37050 1316 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3) Lus10023166 [exp] 292 / 2e-87 AT2G37050 1323 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3) Lus10025849 [exp] 279 / 2e-83 AT4G29990 803 / 0.0 Leucine-rich repeat transmembrane protein kinase protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G242700 [exp] 907 / 0 AT5G48740 1110 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.016G084900 [exp] 305 / 6e-93 AT2G37050 1276 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3) Potri.010G052800 [exp] 300 / 1e-90 AT1G67720 1330 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G181200 [exp] 296 / 3e-89 AT1G67720 1339 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G132100 [exp] 292 / 6e-88 AT2G37050 1317 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3) Potri.007G004700 [exp] 288 / 1e-86 AT2G37050 466 / 2e-149 Leucine-rich repeat protein kinase family protein (.1.2.3) Potri.019G094200 [exp] 270 / 1e-83 AT4G29990 452 / 1e-150 Leucine-rich repeat transmembrane protein kinase protein (.1) Potri.019G094700 [exp] 277 / 1e-82 AT4G29990 652 / 0.0 Leucine-rich repeat transmembrane protein kinase protein (.1) Potri.019G094600 [exp] 276 / 2e-82 AT4G29990 636 / 0.0 Leucine-rich repeat transmembrane protein kinase protein (.1) Potri.019G094300 [exp] 275 / 1e-81 AT4G29990 628 / 0.0 Leucine-rich repeat transmembrane protein kinase protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10038174 pacid=23158157 polypeptide=Lus10038174 locus=Lus10038174.g ID=Lus10038174.BGIv1.0 annot-version=v1.0 ATGGGCGACGCGAGTGTTCTATACCTGACGCGCAAGGCCATCAATAACCTCAATCTCACGCTCAGGAGCACCAGGTATTATCCACAGGTCAATGGGATTG AGGTTTATCAGATTGTTGACATTCCCTTGGAAGCTTCCTCCACAACAGTTTCAGCACTTCAAGTTATCCAGCAGGCTACTGGGTTGGATCTGGGATGGGA GGATGACCCTTGTTTTCCAACACAATGGGTTCATGTTGGATGTGAAGGAAGCCTAGTCACTTCTTTGGAGCTTTCAGGTGTCAATCTGAGGTCAATCAAT CCTACTTTTGGAGACTTGCTGGATCTCAAAACTCTGGATTTACACAACACTTCACTTGATGGAGAGATAAAGAACTTGGGAAGTCTGCAACGTCTTGAGA AGCTGAACCTGAGCTTCAATCATCTAACGTCCTTCGGAGGTGAACTGGATAAATTGGTTAGCCTTCAAGTTCTGGACCTGCAGAATAACAGCTTAGAGGG AGTGGTTCCGCAGAGCTTGGGAGAGATGGAGAACCTTCACCTCCTGAACCTGGAAAATAACAAGCTGCAAGGAACCCTTCCAGAGTCTTTGAACAGAGAA AGTTTGGAAGTCAGGGCATCAGGGAATCTGTGTGTTTCTTTCTCTGCAACAACCTGCAACGAAGCCTCCTTGGACCCTTCCATCGAGATGCCACAAGTTA CAATCTTAGCCAAGAATAAACCGGACAACAAAAACCATGTAGCAATCATACTTGGGGCAGCTGGAAGTTCCTTGCTTGCTCTCATCTTCTGTTCGATTGC ACTACCCTTGTACAGTAGGAAAGAGAGAACTGAAGTTCCTTTTGCACAAAGTCAAGGAACAGAAATGAAGACCTGGAATTCAGCCAGAGTCTTTTCATAC AAGGAAATTAAGACAGCAACAAACAGTTTTAAGGAAGTCATTGGCCGCGGCAGCTTTGGTTCAGTGTACCTTGGGAAGCTTCCTGATGGGAAACAGGTGG CTGTCAAAGTCAGGTTTGATAGAAGTCAACTCGGAGCTGATTCTTTCATCAATGAGGTGCATCTCCTGTCACGAATTCGTCATCAGAATCTAGTGTGTCT AGAAGGATTCTGTTATGAATCAAAGCAGCAGATACTAGTTTACGAGTATCTATCTAGTGGATCTCTGGCTGACCACCTTTATGGATCAAAGAGTAAAAAA ATATCACTAAGCTGGGTTCGCAAGCTGAAGATTGCAGTTGATGCTGCAAAAGGATTGGAATATCTGCACAATGGAAGCGATCCACGAATCATCCACCGCG ACGTGAAATGCAGCAACATACTGCTGGACAAAGACATGAATGCCAGGGTGTGTGACTTTGGTCTTTCCAAGCAACTTGTGCAGTCTGATGCAAGTCATGT CACTACTATGGTCAAGGGCACTGCAGGCTACTTGGATCCTGAGTACTACTCTACCCAACAGCTGACGGAGAAAAGTGACATCTACAGCTTTGGAGTAGTT CTTCTGGAGTTGATTTGCGGGCGAGAGCCGTTGCGCCACACGGGAACTCCTGACTCTTTCAATCTGGTTTTATGGGCTAAGCCATACTTACAAGCTGGAG CATTAGAGATAGTGGATGAGAATATGAAGGAGACTTTCGACGTGGAGAGTATGAGAAAGGCAGCGATGGTTGCTGTAAGGTGTGTAGACAGAGATGCATC AGAGAGACCAAATATTGCTCAGGTCTTGGCTGAGCTCAAAGAAGCCTACAGCATTCAGCTCTCTTATCTGGCTTCTTTTGATTTGTAA
AA sequence Show only first row Show all	>Lus10038174 pacid=23158157 polypeptide=Lus10038174 locus=Lus10038174.g ID=Lus10038174.BGIv1.0 annot-version=v1.0 MGDASVLYLTRKAINNLNLTLRSTRYYPQVNGIEVYQIVDIPLEASSTTVSALQVIQQATGLDLGWEDDPCFPTQWVHVGCEGSLVTSLELSGVNLRSIN PTFGDLLDLKTLDLHNTSLDGEIKNLGSLQRLEKLNLSFNHLTSFGGELDKLVSLQVLDLQNNSLEGVVPQSLGEMENLHLLNLENNKLQGTLPESLNRE SLEVRASGNLCVSFSATTCNEASLDPSIEMPQVTILAKNKPDNKNHVAIILGAAGSSLLALIFCSIALPLYSRKERTEVPFAQSQGTEMKTWNSARVFSY KEIKTATNSFKEVIGRGSFGSVYLGKLPDGKQVAVKVRFDRSQLGADSFINEVHLLSRIRHQNLVCLEGFCYESKQQILVYEYLSSGSLADHLYGSKSKK ISLSWVRKLKIAVDAAKGLEYLHNGSDPRIIHRDVKCSNILLDKDMNARVCDFGLSKQLVQSDASHVTTMVKGTAGYLDPEYYSTQQLTEKSDIYSFGVV LLELICGREPLRHTGTPDSFNLVLWAKPYLQAGALEIVDENMKETFDVESMRKAAMVAVRCVDRDASERPNIAQVLAELKEAYSIQLSYLASFDL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G48740			Leucine-rich repeat protein ki...		Lus10038174 [exp]	0	1
AT5G48740			Leucine-rich repeat protein ki...		Lus10025926 [exp]	1.0	0.9810
AT5G48740			Leucine-rich repeat protein ki...		Lus10038172 [exp]	1.4	0.9551
AT1G43650			nodulin MtN21 /EamA-like trans...		Lus10018889 [exp]	5.5	0.9127
AT3G15220			Protein kinase superfamily pro...		Lus10042862 [exp]	6.3	0.8958
AT5G59190			subtilase family protein (.1)		Lus10000018 [exp]	7.3	0.8407
AT5G61480		PXY, TDR	TDIF receptor, PHLOEM INTERCAL...		Lus10015889 [exp]	7.7	0.9032
AT5G18860		NSH3	nucleoside hydrolase 3, inosin...		Lus10012778 [exp]	7.9	0.8990
AT1G76140			Prolyl oligopeptidase family p...		Lus10034556 [exp]	9.3	0.8123
AT4G20140		GSO1	GASSHO1, Leucine-rich repeat t...		Lus10008230 [exp]	10.6	0.9037
AT1G53165		ATMAP4KALPHA1 ,...	Protein kinase superfamily pro...		Lus10028163 [exp]	10.7	0.9004

Compare expression of checked genes

Lus10038174 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.