Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13150 189 / 4e-58 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025925 [exp] 463 / 1e-165 AT4G13150 396 / 8e-138 unknown protein Lus10038173 [exp] 170 / 2e-52 AT4G13150 332 / 2e-115 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G242800 [exp] 263 / 6e-87 AT4G13150 375 / 8e-130 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10038175 pacid=23158119 polypeptide=Lus10038175 locus=Lus10038175.g ID=Lus10038175.BGIv1.0 annot-version=v1.0 ATGGCTCTAGCGGCCATTCTGGGACATGGCCACTCCTTAAACCTTCCAAGGGTCTCGCCCAAAACCTCCCTTCATCCACGAGATTTGAAGCATTCCTCCT GCTCTCTCACTATTCCTCGGAGAAGGTTCCCTCTAATTGCCAACATTGCAGCTTGTCCTGCTTTTAGGATCAGAAACCTTTCCCAAAAGGCTTCAGGGAA TGACGAAGCTTACAAAGGCTACGATGGTGAAAATACGGCTACAAATGAGATACTTGAGAATCAAAGAAATGAATCCAGTGATACAGGGAATACGTTTCTG ATAATACTAATTGCTGCTCTTGGTGTGGCTGCGATTCTTACGTTCATATCAGCTGGTCTCGGGCAGCCTAGTGCTGGATTGTTTTCTGGTGTCCAATGTC TGCCTGAAACGTTATTAGCTGCAGCACCTGTGGGGTATAGTTTCAAGGCTTTTGGTTATCGCATTATACTTCCTGAACATGCACCAGGATGGCTCTACTT TTGGTTACTCATGGCTGCTGGCTTTGGCCTTTTCATCAGTGAAGAAGCTTTGAACATTTGGGTGGGCATATCTTTGTCACGGATGCTGTCTTTTGATGGA ACGTGGCAGTCTTTCGCTGCATCTTTCTCCAAGAATGCTCCATACATAATGTCTACGGTTATGTGGGTATACTTGGGAGTATGCATCAGTGATATGGTAC CGTTCTACCTCGGAAAACTCTGTAAGCACAGCGGAGCATCAAATGATATCTGTGCAAAGGTTAGCCCCGTTTGTTCACGATTAAGCTCTTTCTTCGCCTA TGTATTTGAAGGCTGGTAG
AA sequence Show only first row Show all	>Lus10038175 pacid=23158119 polypeptide=Lus10038175 locus=Lus10038175.g ID=Lus10038175.BGIv1.0 annot-version=v1.0 MALAAILGHGHSLNLPRVSPKTSLHPRDLKHSSCSLTIPRRRFPLIANIAACPAFRIRNLSQKASGNDEAYKGYDGENTATNEILENQRNESSDTGNTFL IILIAALGVAAILTFISAGLGQPSAGLFSGVQCLPETLLAAAPVGYSFKAFGYRIILPEHAPGWLYFWLLMAAGFGLFISEEALNIWVGISLSRMLSFDG TWQSFAASFSKNAPYIMSTVMWVYLGVCISDMVPFYLGKLCKHSGASNDICAKVSPVCSRLSSFFAYVFEGW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G13150			unknown protein		Lus10038175 [exp]	0	1
AT3G54660		ATGR2, EMB2360,...	glutathione reductase (.1)		Lus10024857 [exp]	1.4	0.8966
AT1G52190			Major facilitator superfamily ...		Lus10038618 [exp]	2.2	0.8622
AT4G15210		BAM5, AT-BETA-A...	REDUCED BETA AMYLASE 1, ARABID...		Lus10018491 [exp]	2.4	0.8754
AT5G43270	SBP	SPL2	squamosa promoter binding prot...		Lus10011356 [exp]	3.5	0.8483
AT2G21340			MATE efflux family protein (.1...		Lus10017964 [exp]	4.0	0.8928
AT4G31780		UGT81A1, EMB279...	UDP-glycosyl transferase 81A1,...		Lus10026895 [exp]	4.9	0.8640
AT4G13430		ATLEUC1, IIL1	isopropyl malate isomerase lar...		Lus10043129 [exp]	5.5	0.8431
AT5G58610			PHD finger transcription facto...		Lus10015266 [exp]	5.8	0.8397
AT2G45660	MADS	ATSOC1, SOC1, A...	SUPPRESSOR OF OVEREXPRESSION O...		Lus10041385 [exp]	7.4	0.8500
AT4G23990		ATCSLG3	ARABIDOPSIS THALIANA CELLULOSE...		Lus10023056 [exp]	8.1	0.8474

Compare expression of checked genes

Lus10038175 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.