Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10038177 pacid=23158489 polypeptide=Lus10038177 locus=Lus10038177.g ID=Lus10038177.BGIv1.0 annot-version=v1.0 ATGAGAGTTAGCTCTCTGCGGGTGCAGACGTACGCAGGCCATCAGCATCGTCAACTGTCTCCTGCATCTAGCACCCTCCCTAATGCCCAACCTCAGCTGC AACTTCCCATGGCATTGCCAACGCAAAACCCTTGCCACATCCCACCACAAACGTCATCACAACCTATGTCCCTATCCCCGGTCATTCAGTCGTCCCCATT GTCAGCACAGCAGCAGCAAGTTAATCCGGCGCATCATGGGCCGAGCAGAAACCCTCATGATGGTAGTAGTGGCTTGGGGAATCAGCTGGGGAAGCAAGGC AACGGCAGCAACATCAACGGCTCCAATAATCTGGCCAGAATTGTCCCCAGCAACGGCATCAGGCACAATCTTCACAACGAAAACATGTAA
AA sequence Show only first row Show all	>Lus10038177 pacid=23158489 polypeptide=Lus10038177 locus=Lus10038177.g ID=Lus10038177.BGIv1.0 annot-version=v1.0 MRVSSLRVQTYAGHQHRQLSPASSTLPNAQPQLQLPMALPTQNPCHIPPQTSSQPMSLSPVIQSSPLSAQQQQVNPAHHGPSRNPHDGSSGLGNQLGKQG NGSNINGSNNLARIVPSNGIRHNLHNENM

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10038177 [exp]	0	1
					Lus10003927 [exp]	3.5	0.7850
AT2G31420	B3		Domain of unknown function (DU...		Lus10009354 [exp]	3.5	0.7303
AT1G44100		AAP5	amino acid permease 5 (.1)		Lus10042742 [exp]	6.2	0.7936
AT4G35890			winged-helix DNA-binding trans...		Lus10025952 [exp]	6.3	0.7078
					Lus10021285 [exp]	7.9	0.7115
AT5G10050			NAD(P)-binding Rossmann-fold s...		Lus10019683 [exp]	8.4	0.6907
AT1G05020			ENTH/ANTH/VHS superfamily prot...		Lus10035340 [exp]	10.1	0.7918
AT3G03450	GRAS	RGL2	RGA-like 2 (.1)		Lus10031172 [exp]	12.4	0.7768
AT5G10840			Endomembrane protein 70 protei...		Lus10010683 [exp]	13.2	0.6453
AT4G15733		SCRL11	SCR-like 11 (.1)		Lus10029762 [exp]	14.3	0.7929

Compare expression of checked genes

Lus10038177 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.