Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31970 395 / 2e-132 CYP82C2, JAH1 "cytochrome P450, family 82, subfamily C, polypeptide 2", cytochrome P450, family 82, subfamily C, polypeptide 2 (.1) AT4G31940 394 / 5e-132 CYP82C4 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) AT3G25180 367 / 2e-121 CYP82G1 cytochrome P450, family 82, subfamily G, polypeptide 1 (.1.2) AT4G31950 337 / 7e-110 CYP82C3 "cytochrome P450, family 82, subfamily C, polypeptide 3", cytochrome P450, family 82, subfamily C, polypeptide 3 (.1) AT2G25160 309 / 6e-99 CYP82F1 "cytochrome P450, family 82, subfamily F, polypeptide 1", cytochrome P450, family 82, subfamily F, polypeptide 1 (.1) AT4G37310 298 / 6e-95 CYP81H1 "cytochrome P450, family 81, subfamily H, polypeptide 1", cytochrome P450, family 81, subfamily H, polypeptide 1 (.1) AT4G37320 297 / 1e-94 CYP81D5 "cytochrome P450, family 81, subfamily D, polypeptide 5", cytochrome P450, family 81, subfamily D, polypeptide 5 (.1) AT4G37330 292 / 8e-93 CYP81D4 "cytochrome P450, family 81, subfamily D, polypeptide 4", cytochrome P450, family 81, subfamily D, polypeptide 4 (.1) AT4G37360 290 / 4e-92 CYP81D2 "cytochrome P450, family 81, subfamily D, polypeptide 2", cytochrome P450, family 81, subfamily D, polypeptide 2 (.1) AT4G37370 290 / 4e-92 CYP81D8 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025923 [exp] 972 / 0 AT4G31970 420 / 4e-142 "cytochrome P450, family 82, subfamily C, polypeptide 2", cytochrome P450, family 82, subfamily C, polypeptide 2 (.1) Lus10025904 [exp] 633 / 0 AT4G31940 413 / 3e-139 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10025901 [exp] 577 / 0 AT4G31940 426 / 2e-144 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10038200 [exp] 471 / 3e-162 AT4G31940 451 / 2e-154 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10025902 [exp] 468 / 7e-161 AT4G31940 449 / 1e-153 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10022762 [exp] 434 / 3e-147 AT4G31940 456 / 4e-156 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10003148 [exp] 413 / 2e-139 AT4G31940 430 / 3e-146 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10002357 [exp] 406 / 3e-136 AT4G31940 432 / 2e-146 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10003147 [exp] 395 / 1e-132 AT4G31940 421 / 7e-143 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G334700 [exp] 508 / 8e-177 AT4G31970 459 / 1e-157 "cytochrome P450, family 82, subfamily C, polypeptide 2", cytochrome P450, family 82, subfamily C, polypeptide 2 (.1) Potri.014G037500 [exp] 423 / 3e-143 AT4G31940 717 / 0.0 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.009G108600 [exp] 405 / 9e-137 AT4G31940 555 / 0.0 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.016G008500 [exp] 395 / 3e-132 AT4G31940 499 / 2e-173 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.004G106600 [exp] 389 / 3e-130 AT3G25180 514 / 1e-179 cytochrome P450, family 82, subfamily G, polypeptide 1 (.1.2) Potri.013G125300 [exp] 387 / 2e-129 AT3G25180 522 / 0.0 cytochrome P450, family 82, subfamily G, polypeptide 1 (.1.2) Potri.014G038000 [exp] 380 / 1e-126 AT4G31940 514 / 5e-179 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.014G038100 [exp] 377 / 4e-125 AT4G31940 520 / 0.0 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.014G038200 [exp] 374 / 8e-124 AT4G31940 501 / 7e-174 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.014G037900 [exp] 372 / 1e-123 AT4G31970 481 / 2e-166 "cytochrome P450, family 82, subfamily C, polypeptide 2", cytochrome P450, family 82, subfamily C, polypeptide 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10038178 pacid=23158171 polypeptide=Lus10038178 locus=Lus10038178.g ID=Lus10038178.BGIv1.0 annot-version=v1.0 ATGGAGCTTTTCAACTTCTCCGACCATGTTGTACCCATTTCCGGCCTAGCAATAACCGCCCTTTTCCTCTTCTGCTACAACCTCCGTCAACGTCACAACA ACAAAATCAGCAACAACAAATATCCACCTCTGCCACCGGAGCCATCAGGCGGCCTTCCAATCTTAGGCCACCTCCTTCAACTCGCTTCTCCCACCAAAAC ACTCGCCCAAGCCTTCGTCGAAATGTCCGACCGTTACGGTCCGATTTTCACCGTCCGGCTCGGCACCCAGCGAGCCGTCGTGGTCAACGACCCGAAAACG GTCCAAGAATGCTTCACGACCCACGACAGAGCATTAGCATCTCGCCCCGTGACAAGCCAGTCAGAGTACTTACACTACCAATACGCAGCGTTGGGATCAA CGCCTTACGGGTCTTACTGGCGCGACATCCGGAAGCTAGCCGTCACTCAGCTGCTCTCCGCCACCCGCCTGAAATCGCTCCGACACGTTCAGGTGGCGGA GATTGACATACTGATGAAAGAATTGTATCATATCAGCCAGAGGAGGAAGGATGGTGGTGTGGTGGTGGTGGGGATTAGTGAGCTTCTGGATCAGCTGGGT TTCAATCTGATTACGACTTTGATTGCTGGGAAAAGGTATTTCAATTACGGGATTGTTGACGGCGATGATTATGAGGAAGGGGAGAGGATTGGGGAGCTGA TGAGGGAGTTCATGCGGATGTGTGCGAAATTCGTGATGTCGGATTTCGTGCCGTTTATGGGATGGACGAATTGGTTTGCTGGGCCTTTGAAATCGATGAA GAGGACTGGTAAGGAATTGGATGAGGTGATGCAGAGTTGGATCGATGAACATAAGCTGAAGAAGAAGAAGAAGAAGAAACAAGAAGACGACAAGGACTTC ATTGACGTGCTGTTGTCCACAGTTAATGCCGATTTTGCTCACGAGTATCCGCCAGAAATGGTCATCAAGGCTACTGCACTGACGATGATTGTGGCAGGTG CCGACACAACAGCAGTCACGATGACATGGATTCTCTCCAACTTGCTAAACAACACACATGCAATGGACCTCGCTCAACAAGAGCTAGATACCAAAGTTGG CCGAACCCGACTGGTCCAATACTCCGACATCGAAAATCTTGTCTACCTCCAAGCCGTGGTCAAGGAAACTCTCCGCCTCTGCCCGTCAGCACCAACCGCC GTCCCACACGTGGCGATGGAGGACTGTACCGTTAGTGGTTACCACGTGCCAAAGGGTTCGATGGTGTTTGCCAACTTGTTGAAGCTCCATCGAGATCCCA ACGTTTGGTCGGATGCTGATGTTTTCAAGCCAGAGAGGTTCCTTGATGATCAATACTCAGGAAAGAATAACGACTGCGAGTTGATTCCATTTGGCTTTGG TAGAAGGTCTTGTCCCGGAATGGCGTTTGCGAATCAAGTTGTGAACTTGACAATTGCTAGGATTCTACAGGGTTTTGATGTTACTAGTCATGAGATTCCG GTGGATATGCGGCAGGGTTTAGGTCTCACTATGCCTAAAGCAACTCCCTTAGAGGTTGTGCTTACCCCTCGTCTCATTACTGAACTTTATCACCTTTGA
AA sequence Show only first row Show all	>Lus10038178 pacid=23158171 polypeptide=Lus10038178 locus=Lus10038178.g ID=Lus10038178.BGIv1.0 annot-version=v1.0 MELFNFSDHVVPISGLAITALFLFCYNLRQRHNNKISNNKYPPLPPEPSGGLPILGHLLQLASPTKTLAQAFVEMSDRYGPIFTVRLGTQRAVVVNDPKT VQECFTTHDRALASRPVTSQSEYLHYQYAALGSTPYGSYWRDIRKLAVTQLLSATRLKSLRHVQVAEIDILMKELYHISQRRKDGGVVVVGISELLDQLG FNLITTLIAGKRYFNYGIVDGDDYEEGERIGELMREFMRMCAKFVMSDFVPFMGWTNWFAGPLKSMKRTGKELDEVMQSWIDEHKLKKKKKKKQEDDKDF IDVLLSTVNADFAHEYPPEMVIKATALTMIVAGADTTAVTMTWILSNLLNNTHAMDLAQQELDTKVGRTRLVQYSDIENLVYLQAVVKETLRLCPSAPTA VPHVAMEDCTVSGYHVPKGSMVFANLLKLHRDPNVWSDADVFKPERFLDDQYSGKNNDCELIPFGFGRRSCPGMAFANQVVNLTIARILQGFDVTSHEIP VDMRQGLGLTMPKATPLEVVLTPRLITELYHL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Lus10038178 [exp]	0	1
AT4G36990	HSF	AT-HSFB1, ATHSF...	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10018488 [exp]	1.4	0.8943
AT5G65380			MATE efflux family protein (.1...		Lus10020952 [exp]	1.4	0.8790
AT1G02360			Chitinase family protein (.1)		Lus10009968 [exp]	1.7	0.8755
AT1G65690			Late embryogenesis abundant (L...		Lus10033705 [exp]	4.6	0.8292
AT1G17745		PGDH	D-3-phosphoglycerate dehydroge...		Lus10037334 [exp]	7.2	0.8148
AT3G12750		ZIP1	zinc transporter 1 precursor (...		Lus10024107 [exp]	8.5	0.8597
AT4G34050		CCoAOMT1	caffeoyl coenzyme A O-methyltr...		Lus10014074 [exp]	18.2	0.8337
AT1G17745		PGDH	D-3-phosphoglycerate dehydroge...		Lus10037333 [exp]	19.1	0.7937
AT5G35960			Protein kinase family protein ...		Lus10027964 [exp]	22.4	0.7831
AT3G19450		CAD-C, ATCAD4	CINNAMYL ALCOHOL DEHYDROGENASE...		Lus10019811 [exp]	24.9	0.8195

Compare expression of checked genes

Lus10038178 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.