Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G25810 337 / 6e-108 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT3G25830 323 / 2e-102 ATTPS-CIN "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1) AT3G25820 323 / 2e-102 ATTPS-CIN "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1.2) AT4G16740 320 / 6e-102 ATTPS03 terpene synthase 03 (.1.2) AT2G24210 305 / 6e-96 AtTPS10 terpene synthase 10 (.1) AT4G16730 299 / 5e-94 AtTPS02 terpene synthase 02 (.1) AT1G61680 227 / 1e-66 ATTPS14 terpene synthase 14 (.1.2) AT1G70080 193 / 1e-53 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT5G23960 187 / 3e-52 ATTPS21 terpene synthase 21 (.1.2) AT3G14490 179 / 8e-49 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025922 [exp] 1026 / 0 AT3G25810 353 / 3e-114 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10001110 [exp] 781 / 0 AT3G25810 362 / 1e-118 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10033643 [exp] 556 / 0 AT4G16730 356 / 2e-115 terpene synthase 02 (.1) Lus10006356 [exp] 429 / 3e-143 AT3G25820 371 / 3e-121 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1.2) Lus10012312 [exp] 423 / 8e-141 AT4G16740 363 / 3e-118 terpene synthase 03 (.1.2) Lus10006355 [exp] 398 / 5e-131 AT2G24210 361 / 7e-117 terpene synthase 10 (.1) Lus10031352 [exp] 352 / 9e-118 AT3G25810 236 / 2e-73 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10018500 [exp] 327 / 2e-104 AT4G16740 419 / 1e-140 terpene synthase 03 (.1.2) Lus10018501 [exp] 301 / 9e-94 AT4G16740 413 / 1e-137 terpene synthase 03 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G023006 [exp] 392 / 2e-129 AT3G25830 540 / 0.0 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1) Potri.019G023008 [exp] 387 / 6e-128 AT3G25830 535 / 0.0 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1) Potri.017G041700 [exp] 381 / 6e-125 AT3G25810 432 / 3e-145 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Potri.007G118600 [exp] 363 / 3e-118 AT4G16740 462 / 3e-157 terpene synthase 03 (.1.2) Potri.019G022338 [exp] 355 / 4e-115 AT3G25830 483 / 8e-165 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1) Potri.001G308300 [exp] 351 / 2e-113 AT3G25830 507 / 4e-174 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1) Potri.001G308200 [exp] 351 / 2e-113 AT3G25810 499 / 4e-171 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Potri.007G119700 [exp] 340 / 2e-108 AT4G16740 438 / 8e-147 terpene synthase 03 (.1.2) Potri.011G031800 [exp] 335 / 1e-107 AT3G25830 382 / 5e-126 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1) Potri.019G023020 [exp] 294 / 2e-94 AT3G25830 440 / 1e-151 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01397 [flax] [poplar] Terpene_synth Terpene synthase, N-terminal domain CL0613 [flax] [poplar] Terp_synthase PF03936 [flax] [poplar] Terpene_synth_C Terpene synthase family, metal binding domain
Representative CDS sequence Show only first row Show all	>Lus10038179 pacid=23158213 polypeptide=Lus10038179 locus=Lus10038179.g ID=Lus10038179.BGIv1.0 annot-version=v1.0 ATGGAGATTAATGTGGTGGCATCATCTCAAGCTGGAAAGCTCTTCATGATGCGATCAACAATTCATCATCGTCATCCTCATCATCGCCCTACAACCACAA CCCCTTCTTCCTTGCACAACAAGTTGCGAGTTCGATCCTCCATTCAACTGCCTGAAAATGGTACTGCGACTAGCGTTGCAACTCGGCGATCAGGAAACTA TCAGCCGGGAATATGGGGAATTCGTGCCCCAGCTGAAACCAAACTTGCTGCCAACCATACTACTCTTAACACTACCACGCAATTCTCATCAAGTAACTCG AGAAGGATGGAAGAGTTGAAAAACCGCGTGAAAGTTTTGCTGGAGAAAGGAGATGATGAGATAATGAACAGGCTGGAGCTGATCGACATTCTGCAACGCC TTGGGCTGGCTTACCATTTCCAACCACAACTTCAAAAATCACTTCAGACAATCGCTGCTTCTGATGACGACGACCTTTATAACCACCTTTACTCTTGCGC TCTCCGGTTTCGACTACTCAGGCAGGCAGGATTCCCTGTCTCTCCAGATGTGTTGAATAGCTTTCGAGACGAAGAAATGTCGAGCGACATCAAAGGGTTG TTGGCCCTTTACGAAGCCTCGCATCTTGGGGTAGTAGGGGAAGAGGATATGTTGGATGATGCCAAGGCTTTTGCTGTAAGGAATTTGAAAGAGGCCAACA TTAATGACGACCTGATCTTGGCGAAGAAAGTGCGGCATGCACTGGAGCTACCATTGCATTGGAGATCCAGTTGGGCTGAGACTTGCTGGTTCATTCATCT ATGCCGTCTAGATGCTTGTATCCCCTCACCTTTGCTTGAGCTGGCCTTCTTGGACTTTAACAATCTCCAAAAGCTACACCTTCAGGAGCTTGAGGAACTA ACTAGTTGGTGGAAAGATTTAGGTCTGATGGAAGGAGCCGAGTTTGCTAGAGATGCCATGGTTGAGAGTTACTTGTGGAGCATCTCAGCGAGCGCCGACC CCCAAATGAGCACCTTGAGGAAAGCAACCGCCAAAGTTGCCGTCATTGTTCACATTCTCGATGATGCTTATGATGTTTACGGTTTCTTACCCGAACTCGA GCTCTTCACTTCAGCCATCGAGAGGTGGGATGTCAACGACATCGATAAGCTACCTCGCTATCTGCAGTTGTGCTTCATGGCAGTCTACAATCTCGGCAAT GAAATGGCTTACTCCAACTTGAAACAGCAAGGATTCAACAGTTTGCCTTACATCAAAAAATCGTGGGCGGATCTATGTCATTCATACTTAGAGGAAGCAA AGAGTTACCATTCTGGATGTAACCAAACACTGGACCAGTATTTGAAGGTTGCATGGAAATCAGTAGCCTGCGCCATTGTACTCATTCAAGGCTATCTCTC GATGCCGGGCGAAACACTGACACATGGCACTTTAGATCTCATTTTCAAGGCCGACCTCACACGCTTGACTTCGATCATTGTTCGACTGATCAATGATCTT GCTTCCTCCAAGGGTGAGCTAGAAAGAGGAGATGTGCTGAAATCGGTGGAATGCTACATGAAAGAGAAAGGGGTTTCTGAAAGAGTTGCCAGAGACCATA TCGAGAAGTTAATTGGTGAAACATGGAAGTTGCTAAATCAAGAAATCCTGGATGTACAAGGTGGTGGTTCATCGGCTACTCTCATTCCGAAAAGTTTCGT GACGATGGCAGTGGATGTGGTTCGAGCTAGTCACTTCATGTATAAACACAGGGAGTCGTCTAGAGGATCTTCTAAGGATGAAGCAGACACAATGCCTCTA CTTTCTCATTGA
AA sequence Show only first row Show all	>Lus10038179 pacid=23158213 polypeptide=Lus10038179 locus=Lus10038179.g ID=Lus10038179.BGIv1.0 annot-version=v1.0 MEINVVASSQAGKLFMMRSTIHHRHPHHRPTTTTPSSLHNKLRVRSSIQLPENGTATSVATRRSGNYQPGIWGIRAPAETKLAANHTTLNTTTQFSSSNS RRMEELKNRVKVLLEKGDDEIMNRLELIDILQRLGLAYHFQPQLQKSLQTIAASDDDDLYNHLYSCALRFRLLRQAGFPVSPDVLNSFRDEEMSSDIKGL LALYEASHLGVVGEEDMLDDAKAFAVRNLKEANINDDLILAKKVRHALELPLHWRSSWAETCWFIHLCRLDACIPSPLLELAFLDFNNLQKLHLQELEEL TSWWKDLGLMEGAEFARDAMVESYLWSISASADPQMSTLRKATAKVAVIVHILDDAYDVYGFLPELELFTSAIERWDVNDIDKLPRYLQLCFMAVYNLGN EMAYSNLKQQGFNSLPYIKKSWADLCHSYLEEAKSYHSGCNQTLDQYLKVAWKSVACAIVLIQGYLSMPGETLTHGTLDLIFKADLTRLTSIIVRLINDL ASSKGELERGDVLKSVECYMKEKGVSERVARDHIEKLIGETWKLLNQEILDVQGGGSSATLIPKSFVTMAVDVVRASHFMYKHRESSRGSSKDEADTMPL LSH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G25810			Terpenoid cyclases/Protein pre...		Lus10038179 [exp]	0	1
AT2G30340	AS2	LBD13	LOB domain-containing protein ...		Lus10029061 [exp]	1.7	0.7962
AT1G06990			GDSL-like Lipase/Acylhydrolase...		Lus10026406 [exp]	2.4	0.7630
AT1G65620	AS2	AS2	ASYMMETRIC LEAVES 2, Lateral o...		Lus10013610 [exp]	11.5	0.7381
AT5G06740			Concanavalin A-like lectin pro...		Lus10029291 [exp]	13.9	0.6590
AT1G61290		ATSYP124, SYP12...	syntaxin of plants 124 (.1)		Lus10018441 [exp]	17.5	0.6957
AT4G14746			unknown protein		Lus10025761 [exp]	19.4	0.6798
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10001037 [exp]	24.4	0.6909
AT3G05950			RmlC-like cupins superfamily p...		Lus10035278 [exp]	28.8	0.6786
AT1G14550			Peroxidase superfamily protein...		Lus10024206 [exp]	48.3	0.6350
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10006693 [exp]	56.2	0.6458

Compare expression of checked genes

Lus10038179 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.