Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G25030 94 / 2e-22 RING/U-box superfamily protein (.1.2) AT4G13100 94 / 3e-22 RING/U-box superfamily protein (.1.2.3.4.5) AT3G07120 95 / 4e-22 RING/U-box superfamily protein (.1) AT4G22250 82 / 2e-18 RING/U-box superfamily protein (.1) AT4G03965 79 / 3e-17 RING/U-box superfamily protein (.1) AT1G62370 78 / 7e-17 RING/U-box superfamily protein (.1) AT5G04460 44 / 0.0001 RING/U-box superfamily protein (.1.2.3) AT3G06140 43 / 0.0001 RING/U-box superfamily protein (.1) AT4G21070 42 / 0.0005 ATBRCA1 ARABIDOPSIS THALIANA BREAST CANCER SUSCEPTIBILITY1, breast cancer susceptibility1 (.1) AT1G18660 41 / 0.0006 zinc finger (C3HC4-type RING finger) family protein (.1), zinc finger (C3HC4-type RING finger) family protein (.2), zinc finger (C3HC4-type RING finger) family protein (.3), zinc finger (C3HC4-type RING finger) family protein (.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025921 [exp] 353 / 1e-122 AT3G07120 117 / 3e-31 RING/U-box superfamily protein (.1) Lus10035335 [exp] 74 / 2e-16 AT4G22250 114 / 4e-33 RING/U-box superfamily protein (.1) Lus10029993 [exp] 73 / 5e-16 AT4G03965 118 / 2e-34 RING/U-box superfamily protein (.1) Lus10015152 [exp] 73 / 2e-15 AT4G03965 123 / 1e-35 RING/U-box superfamily protein (.1) Lus10034030 [exp] 43 / 0.0002 AT5G19080 344 / 1e-116 RING/U-box superfamily protein (.1) Lus10017455 [exp] 43 / 0.0003 AT5G04460 858 / 0.0 RING/U-box superfamily protein (.1.2.3) Lus10028827 [exp] 43 / 0.0003 AT5G04460 879 / 0.0 RING/U-box superfamily protein (.1.2.3) Lus10022774 [exp] 41 / 0.0007 AT5G48655 153 / 7e-47 RING/U-box superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G243800 [exp] 118 / 2e-30 AT3G07120 191 / 3e-57 RING/U-box superfamily protein (.1) Potri.004G003101 [exp] 84 / 8e-19 AT4G03965 135 / 3e-39 RING/U-box superfamily protein (.1) Potri.014G158900 [exp] 80 / 9e-18 AT4G22250 103 / 2e-27 RING/U-box superfamily protein (.1) Potri.002G224200 [exp] 79 / 2e-17 AT4G03965 116 / 7e-33 RING/U-box superfamily protein (.1) Potri.008G030100 [exp] 43 / 0.0002 AT5G04460 805 / 0.0 RING/U-box superfamily protein (.1.2.3) Potri.010G231100 [exp] 42 / 0.0006 AT5G04460 768 / 0.0 RING/U-box superfamily protein (.1.2.3) Potri.003G148300 [exp] 41 / 0.0007 AT5G48655 77 / 6e-17 RING/U-box superfamily protein (.1.2.3) Potri.003G156400 [exp] 41 / 0.001 AT2G34920 172 / 5e-45 embryo sac development arrest 18, RING/U-box superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10038180 pacid=23158370 polypeptide=Lus10038180 locus=Lus10038180.g ID=Lus10038180.BGIv1.0 annot-version=v1.0 ATGTCGGCGGTGGAACGCAACTCCCTCACCGGATTGACCCTCGATGCAATATTGGGAAACAACAACAACAACAACCAGAGAACTAATCAGACATCGTTTT CTCCTCCTCGTCACGCGAACCGGACATTATCAGACGTAATTCGCGACGAAGATCCGTCGTTTGGGCACAAGGACAGACCTCACCCGACATCCATGATGAT GTCTCGCCGCAACTCGGTGCGCTTAAGCGCCAATGCGGATGGCGATACGACGTCATCGAAATTCAAACCACAGATGTCTCGCCGAAGCTCCACTCGTTTC GGGGACGACCTCCCTGCATCAGTGGAAACGCCAGCTGTCAGGGACGAAGTCCACCCCAGCTTCAAGCCACAGGTATCGAGACGGCGGTCATTGGCGGAAG AGAAGTCAGGGATGTCTGCTAGAGAGGCGATCGCGGCACAGGAAGCTTCAGAAGCAGCTCATGCGGCGCATGGGAAACAAGAGGATGATGAAGAAGAGGA CGAGGAGGAAGAGGAGGAATTCGGTGAGGTCGGAGATGATGAAGAAGAAGAAGAAGAAGAACAAGAGGAGGAGGAAGATGGTGATGGTGGGATGGGTGGA GGAATGTCATTGATGGATTTGTTGGAAGAGACAGATAGGCAGATGGGGTTTGAAGGAGCAAAGTATGTGGTTGGGGAGGAAGATGAAGAGCAACAGGCTT ATTATGATGACGATGAAGATGATGATACTGCGACTACTACTACAAGAAAAGGAACGGAGCAAGCGTGCTGCATTTGTATGGTTAGACATAAAGGTGCGGC GTCTAGTTCATGTGGCCATACCTATTGCAGACTCTGTTCCAGGGAGCTCATGGTTCAACGAGGGAATTGCCCGCTCTGCAATTCCTTCATTTTAGAGATT CTTGAGATTTTCTAA
AA sequence Show only first row Show all	>Lus10038180 pacid=23158370 polypeptide=Lus10038180 locus=Lus10038180.g ID=Lus10038180.BGIv1.0 annot-version=v1.0 MSAVERNSLTGLTLDAILGNNNNNNQRTNQTSFSPPRHANRTLSDVIRDEDPSFGHKDRPHPTSMMMSRRNSVRLSANADGDTTSSKFKPQMSRRSSTRF GDDLPASVETPAVRDEVHPSFKPQVSRRRSLAEEKSGMSAREAIAAQEASEAAHAAHGKQEDDEEEDEEEEEEFGEVGDDEEEEEEEQEEEEDGDGGMGG GMSLMDLLEETDRQMGFEGAKYVVGEEDEEQQAYYDDDEDDDTATTTTRKGTEQACCICMVRHKGAASSSCGHTYCRLCSRELMVQRGNCPLCNSFILEI LEIF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07120			RING/U-box superfamily protein...		Lus10038180 [exp]	0	1
					Lus10013881 [exp]	3.3	0.9023
					Lus10030782 [exp]	5.1	0.8570
AT1G26730			EXS (ERD1/XPR1/SYG1) family pr...		Lus10004284 [exp]	6.9	0.8181
AT1G66350	GRAS	RGL1	RGA-like 1 (.1)		Lus10041128 [exp]	8.0	0.7850
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10040382 [exp]	8.7	0.6866
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Lus10013920 [exp]	9.5	0.7803
AT2G16730		BGAL13	beta-galactosidase 13, glycosy...		Lus10014126 [exp]	10.4	0.7803
					Lus10014189 [exp]	10.7	0.6593
AT5G45670			GDSL-like Lipase/Acylhydrolase...		Lus10015241 [exp]	11.2	0.7803
AT5G20260			Exostosin family protein (.1)		Lus10039980 [exp]	12.0	0.7803

Compare expression of checked genes

Lus10038180 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.