Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48720 223 / 3e-71 XRI1, XRI x-ray induced transcript 1 (.1.2) AT2G01990 54 / 3e-08 unknown protein AT1G14630 50 / 4e-07 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025920 [exp] 418 / 1e-147 AT5G48720 237 / 2e-77 x-ray induced transcript 1 (.1.2) Lus10013793 [exp] 63 / 6e-11 AT2G01990 118 / 1e-31 unknown protein Lus10039139 [exp] 59 / 2e-09 AT1G14630 120 / 3e-32 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G244000 [exp] 293 / 2e-98 AT5G48720 281 / 2e-94 x-ray induced transcript 1 (.1.2) Potri.014G190000 [exp] 229 / 2e-73 AT5G48720 226 / 2e-73 x-ray induced transcript 1 (.1.2) Potri.010G100700 [exp] 55 / 3e-08 AT1G14630 166 / 1e-50 unknown protein Potri.008G140900 [exp] 55 / 3e-08 AT2G01990 148 / 3e-43 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10038181 pacid=23158277 polypeptide=Lus10038181 locus=Lus10038181.g ID=Lus10038181.BGIv1.0 annot-version=v1.0 ATGGATTCTCAATCATACCAGCTCTGGAAACTTGGTGGATCACCAAGCTATAGAACTGTTGAACAGTGTTTCCCCCTTTTGTTGAACAGCACTGCAGCAG CGCAGGAAATTGGGATTGGCTGGGGACGAATCATGATCTCCCCAAGAATGCGAATCCAGGTGCAGTTTTTGGCCAAGTTCTCAGTTTCTGATATTAGATT TTTCCATTACTTTCGATGTGGATTAGAAATGATAGATGAGTTTGCTGATCCATGGGAAACTAATTTGCTTACAGATGCAGTATGGAATGAGGTGACACTT AATGAAGAAGATATCTCTTATATGTTTGATGAAACCACTCCGATCAAAGAATGTGGTGATTTGGCTTATCATGATGGAAATTATGACAGTATGAATAAGG AGCTACAAGAATGTAGAGAGACTTCTTCACTGATAAAGAGGCGACGTATGCTACAATTTGACACTGAAGCGGTAGCTTCACCCTTTTGTAATGAGGAAAT GTCATCTGCATTTCTGAGATCAAATGAAAGAGCAGATTCTCTGGAAGATGTTTCACCTCTTGCATCACAATGGGTTCAAGGGGCAACAGGCTGTGATGAT CTAGATCAGACATCTGAAAGATGGCTTGATGAATGCTTGAAGGATGTCGATATGCAGTGTAGTCCTGTTGACATGGACTTTGCAGGATCATCAGAAGTTC AAATTGACATCTCAGAGTTCTGTGATCCACCTCCTGAGCTTGCAGCTAATACAGTTCCAAAAAGGGTTTCTCGGCTTCCCAAGAATATAATATTGAGAGG GAGGAAGTCAAGCATTCAACCATCAAGCAAGTTACCTTCTTCTGTTGCGTATCCGTTTGCGTTCATCAAACCCTGTGCATATCATGGAGATGTCACCCTG AAGGACATAAACCAGAAGATCCACACTCCACCGCCGCCACCAAAACCAAAGTTGCCTGAAGCTTATCCAACTTCAGCTTTCTCTGGTAAGCTAGTTGTTG GGAAGACTAAAATCCGTACAGAAGGAGGAAAAGGAAGCATCACAATCATGAGAACTAAAGGATGA
AA sequence Show only first row Show all	>Lus10038181 pacid=23158277 polypeptide=Lus10038181 locus=Lus10038181.g ID=Lus10038181.BGIv1.0 annot-version=v1.0 MDSQSYQLWKLGGSPSYRTVEQCFPLLLNSTAAAQEIGIGWGRIMISPRMRIQVQFLAKFSVSDIRFFHYFRCGLEMIDEFADPWETNLLTDAVWNEVTL NEEDISYMFDETTPIKECGDLAYHDGNYDSMNKELQECRETSSLIKRRRMLQFDTEAVASPFCNEEMSSAFLRSNERADSLEDVSPLASQWVQGATGCDD LDQTSERWLDECLKDVDMQCSPVDMDFAGSSEVQIDISEFCDPPPELAANTVPKRVSRLPKNIILRGRKSSIQPSSKLPSSVAYPFAFIKPCAYHGDVTL KDINQKIHTPPPPPKPKLPEAYPTSAFSGKLVVGKTKIRTEGGKGSITIMRTKG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G48720		XRI1, XRI	x-ray induced transcript 1 (.1...		Lus10038181 [exp]	0	1
AT5G25590			Protein of unknown function (D...		Lus10000014 [exp]	1.7	0.8855
AT5G25590			Protein of unknown function (D...		Lus10002864 [exp]	2.4	0.8714
AT5G25590			Protein of unknown function (D...		Lus10038627 [exp]	5.5	0.8527
AT1G20830		MCD1	multiple chloroplast division ...		Lus10030727 [exp]	5.5	0.8187
AT5G35360		CAC2	acetyl Co-enzyme a carboxylase...		Lus10042901 [exp]	8.0	0.8363
AT1G01880			5'-3' exonuclease family prote...		Lus10041375 [exp]	8.1	0.7878
AT5G08630			DDT domain-containing protein ...		Lus10039626 [exp]	10.4	0.7951
AT2G04940			scramblase-related (.1)		Lus10004532 [exp]	10.7	0.8135
AT3G52210			S-adenosyl-L-methionine-depend...		Lus10038644 [exp]	15.0	0.7984
AT5G10960			Polynucleotidyl transferase, r...		Lus10029713 [exp]	15.3	0.6949

Compare expression of checked genes

Lus10038181 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.