Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07140 741 / 0 GPI transamidase component Gpi16 subunit family protein (.1.2) AT1G04850 278 / 3e-84 ubiquitin-associated (UBA)/TS-N domain-containing protein (.1) AT5G48690 224 / 1e-65 unknown protein AT2G01650 50 / 6e-06 PUX2 plant UBX domain-containing protein 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025918 [exp] 1155 / 0 AT3G07140 772 / 0.0 GPI transamidase component Gpi16 subunit family protein (.1.2) Lus10037827 [exp] 278 / 4e-84 AT1G04850 590 / 0.0 ubiquitin-associated (UBA)/TS-N domain-containing protein (.1) Lus10017103 [exp] 261 / 9e-78 AT1G04850 573 / 0.0 ubiquitin-associated (UBA)/TS-N domain-containing protein (.1) Lus10021798 [exp] 47 / 7e-05 AT2G01650 532 / 0.0 plant UBX domain-containing protein 2 (.1) Lus10034612 [exp] 45 / 0.0003 AT2G01650 541 / 0.0 plant UBX domain-containing protein 2 (.1) Lus10002262 [exp] 44 / 0.0006 AT5G35690 585 / 0.0 unknown protein Lus10037870 [exp] 44 / 0.001 AT3G20630 1269 / 0.0 TITAN6, phosphate deficiency root hair defective1, ubiquitin-specific protease 14 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G190600 [exp] 869 / 0 AT3G07140 790 / 0.0 GPI transamidase component Gpi16 subunit family protein (.1.2) Potri.002G244500 [exp] 335 / 3e-107 AT1G04850 311 / 1e-104 ubiquitin-associated (UBA)/TS-N domain-containing protein (.1) Potri.001G316400 [exp] 301 / 6e-93 AT1G04850 581 / 0.0 ubiquitin-associated (UBA)/TS-N domain-containing protein (.1) Potri.017G056900 [exp] 294 / 2e-90 AT1G04850 577 / 0.0 ubiquitin-associated (UBA)/TS-N domain-containing protein (.1) Potri.008G133700 [exp] 46 / 0.0001 AT2G01650 497 / 4e-174 plant UBX domain-containing protein 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04113 [flax] [poplar] Gpi16 Gpi16 subunit, GPI transamidase component PF09409 [flax] [poplar] PUB PUB domain
Representative CDS sequence Show only first row Show all	>Lus10038183 pacid=23158436 polypeptide=Lus10038183 locus=Lus10038183.g ID=Lus10038183.BGIv1.0 annot-version=v1.0 ATGTTACTTCCCCTTCGATCCACGCTTCTGCTATCGCTCTTTCTACTACTTTCCTCTCGGACGCTCCGATGTGGATCAGCGGTGGAGCTAGTTGGAGGAG GGGAAGAGTTCCATGAAGAGCTGCTGTTGAAGCCTTTACCTGATCGGAAAGTCTTGGCCCATTTCCACTTCCAAAGTACAGCTCCAGGTTCCAATGGCCG CCACCATCATCTCTTTCCAAAAGCCATCTCTCAACTGGTCCAGAAATTCAGAGTTAAGGAAATGGAATTATCTTTCACACAAGGTCGTTGGAACTATGAA CGTTGGGGTGGATTTGATCCCGCATCTAGCAGCAACGCTAAGCCTCCTGGAGTTGAGTTGTGGGCCGTCTTTGATGTCTCTCCAGACCAAGTTGATTCTT ACTGGAAGAATTTAACCCACACCCTTTCTGGACTTTTTTGTGCCTCCATTAATTTTCTGGAGTCATCGACCATGTATTCTGCACCTAAAAGGAGCTTCCG GGAGACACCAGGAAGTCTCAGATATGGTACATTGCCACGTGAAGCTGTTTGCACCGAGAACCTAACTCCTTGGTTGAAGCTCCTTCCATGTCGAGATAAA GCTGGTCTCTCGTCCTTGATGGATAGACCATCAATCTACAGAGGCTTTTATCATTCTCAACGGTTGCATTTAACCTCTAATGCATCACGTCTTGTAAAGA CGGATTCGGACGTCACTCTGCAACAGACACTTACTGTTGTTCTTCAGCCGGACAGCGACTTAATTCATTCACGTGAGAGAGAATTTCAACCGAGTTGGTC TTTAAGTTCGATCTTTGGACGGAAGGTTAGTGGCAAATGTGGTCTTGCTCAGTCTTGTAAAGTGTACCTTCAGCTTGACAAGGATATACTGTCAGAACAA AAGGAAAATGTGAATGATACTCCTACTAGTTTAGCATCCGTAGAATTTACCGGTGAAACCAGTTTTGAGTTGTCAGTTAACCCAGACAGAGTAATCGAGG AACAAAATCAGCAGCAGCGGAAGGGTTCCTCCGTTCTCTATGAATTTTGGGTCGAGAAGTACAATGAGTCTTGGCCATTTGACCTTGGCTTGAAATGGAA GTCTCCTGTTTTTTGGTCATGTCAACAGGCACCATTGCATGCTAGTAGGTTCTTGATGGGCAGTGGGAACGAAAGAGGTGCTATAGCTATCTTACTGCAG TCTACCGGATTCTTGGAGGCTTGTAGTGTAGGAGATGGATGTGAATTGCAAGTTGATGTTTTCCAAGTTGTGCCATGGTACATAAAAGTATATTATCATA CCCTTAAATTGTTTGTGGATGATCAAGCTCAGCCTGTTGGAAATTTCGTTGAGAAACTTCATGTTTCTCCTTCAATGGACAAAAAATCTCCCGGAATGAT GGAAATGGTTCTGAAACTGCCTTGTGATATGAGATCAGCTGCATTGACATTGGATTTTGATAAGGGGTTTTTGCACATCGATGAATATCCTCCAGACGCT AATCAAGGATTTGATATTCCATCGGCAGTTATAAGTTTCACTGGCTTCCATTCAGGCATGCGTTTTCCAAGCAACGATTCAATTCAAAAATCGCCTATGC TATCCAGCTTTCAGGCAAAGAACCATGTGAAGTCCTACACAGAAGTATTACTTGTACCTTTGACTACACCTGATTTCAGCATGCCTTACAATGTCATTAC CATCACATGCACAGTGTTTGCGCTCTACTTCGGGTCTCTGCTCAATGTACTCCGGCGGAGAGCTGCTGAGGAGAGGTACCTTAAAGAAAAAGCTACGAAG AAAAATGGCCCGCTATCAGAACTGCTGTCAAGATTATCAGCTAAGCTGAGAGGAAAGCCATTGGAATCTCAACGACCCTCTTCTGGTTCATCATCCTTGA TCAACTCAAAGCTGATCGTGAAGGTTATATTGGTGGCTGGACTTGCAGTTGTTTGGCAATTGGTTCACCGGGGTCACATTGTTTCTTTTGCAGAGATAGA TGTTGTGGAAGTAGACAAGAAACTGCTTGGAGAACTAGAAGACATGGGTTTTCCTCTACCTCGAGCTGCCAGGGCACTTCATCATTCTGGAAATTCTAGC ATTGAGGCTGCTGTTAATTGGATCATTGATCACGAGAATGACCCGAATATTGATCAGATGCCCATGATAGCAGTGAACATTGATATTGAGTGCCCTCCTC AGCAAACGCATACCATGGAAGAAATGGAAGCAAAAGCACTTGAACTAAGGGACAAGGCTCGAAAGAAGAGGGAAGAAGAAGAAAAGAAACTTGAAAGGGA AAGGGAGAAGGAAAGAATCCATGCTGGTAAGCAGATTTCAGAAGCAAAACGAATCGAAGAAGACAGTGTGAGAAGACGATATATCGCCCAGAAGAAAGCA GAGAAAGAGGAAGAGAAAAGAGCAAGGCAGAGAATCAGAGTGAAACTAGAAGAAGATAAGGCAGAAAGAAGACGGATGCTTGGGTTGCCTCCAGTTACGG ATACGATAATCCAAAATGCCAGGCCCTCTAGTCAAGAGAAAAAGCACAAGTATGTTAAGTCAGTTGAAAAAGCTGAACAACTAAGAGAATGTTTAAGGTC TCTCAAGCATAATCACCAGAATGATGAAGCAGCAGTCAAGAAGGCTTTCCAAACTCTTCTCCTTTACGTCGGCAATGTTGCGAGGAATCCTGACGTTGAA AAGCTGAGGAAGATACGAATAAGTAACCCGGCGTTTCAGAGTAGAGTTGGGAGAATGACAGGAGGCATGCAGTTCCTTGGCCTTTGTGGGTTTGAGATAA TTGAAGATGGGGAATTCTTGTATCTTCCTGGAGATAAAGTTGACATGGAAGTGCTAAGTTCAGCTGGATCAGAATTGAAGTCTGCAATGACGAATCCTTT CTTTGGACTCCTCTCCCGTCTTTAA
AA sequence Show only first row Show all	>Lus10038183 pacid=23158436 polypeptide=Lus10038183 locus=Lus10038183.g ID=Lus10038183.BGIv1.0 annot-version=v1.0 MLLPLRSTLLLSLFLLLSSRTLRCGSAVELVGGGEEFHEELLLKPLPDRKVLAHFHFQSTAPGSNGRHHHLFPKAISQLVQKFRVKEMELSFTQGRWNYE RWGGFDPASSSNAKPPGVELWAVFDVSPDQVDSYWKNLTHTLSGLFCASINFLESSTMYSAPKRSFRETPGSLRYGTLPREAVCTENLTPWLKLLPCRDK AGLSSLMDRPSIYRGFYHSQRLHLTSNASRLVKTDSDVTLQQTLTVVLQPDSDLIHSREREFQPSWSLSSIFGRKVSGKCGLAQSCKVYLQLDKDILSEQ KENVNDTPTSLASVEFTGETSFELSVNPDRVIEEQNQQQRKGSSVLYEFWVEKYNESWPFDLGLKWKSPVFWSCQQAPLHASRFLMGSGNERGAIAILLQ STGFLEACSVGDGCELQVDVFQVVPWYIKVYYHTLKLFVDDQAQPVGNFVEKLHVSPSMDKKSPGMMEMVLKLPCDMRSAALTLDFDKGFLHIDEYPPDA NQGFDIPSAVISFTGFHSGMRFPSNDSIQKSPMLSSFQAKNHVKSYTEVLLVPLTTPDFSMPYNVITITCTVFALYFGSLLNVLRRRAAEERYLKEKATK KNGPLSELLSRLSAKLRGKPLESQRPSSGSSSLINSKLIVKVILVAGLAVVWQLVHRGHIVSFAEIDVVEVDKKLLGELEDMGFPLPRAARALHHSGNSS IEAAVNWIIDHENDPNIDQMPMIAVNIDIECPPQQTHTMEEMEAKALELRDKARKKREEEEKKLEREREKERIHAGKQISEAKRIEEDSVRRRYIAQKKA EKEEEKRARQRIRVKLEEDKAERRRMLGLPPVTDTIIQNARPSSQEKKHKYVKSVEKAEQLRECLRSLKHNHQNDEAAVKKAFQTLLLYVGNVARNPDVE KLRKIRISNPAFQSRVGRMTGGMQFLGLCGFEIIEDGEFLYLPGDKVDMEVLSSAGSELKSAMTNPFFGLLSRL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07140			GPI transamidase component Gpi...		Lus10038183 [exp]	0	1
AT1G31440			SH3 domain-containing protein ...		Lus10034755 [exp]	1.4	0.7171
AT4G32180		ATPANK2	pantothenate kinase 2 (.1.2.3)		Lus10009520 [exp]	2.2	0.8051
AT3G01720			unknown protein		Lus10014878 [exp]	4.0	0.7156
AT2G14520			CBS domain-containing protein ...		Lus10020494 [exp]	7.7	0.6986
AT1G27170			transmembrane receptors;ATP bi...		Lus10014582 [exp]	9.2	0.6753
AT5G47760		ATPK5, ATPGLP2	2-phosphoglycolate phosphatase...		Lus10039102 [exp]	18.5	0.6637
AT2G14620		XTH10, XTR14	xyloglucan endotransglucosylas...		Lus10037240 [exp]	32.3	0.7036
AT4G27080		ATPDI7, ATPDIL5...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10040029 [exp]	33.3	0.6467
AT1G11570		NTL	NTF2-like (.1.2)		Lus10006762 [exp]	67.9	0.6962
AT3G24110			Calcium-binding EF-hand family...		Lus10016675 [exp]	75.4	0.6865

Compare expression of checked genes

Lus10038183 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.