Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G65450 183 / 7e-53 HXXXD-type acyl-transferase family protein (.1.2.3) AT5G41040 169 / 1e-47 HXXXD-type acyl-transferase family protein (.1.2) AT5G48930 161 / 1e-44 HCT hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) AT1G27620 138 / 4e-36 HXXXD-type acyl-transferase family protein (.1) AT5G63560 131 / 7e-34 HXXXD-type acyl-transferase family protein (.1) AT3G48720 127 / 4e-32 DCF DEFICIENT IN CUTIN FERULATE, HXXXD-type acyl-transferase family protein (.1) AT1G03390 127 / 5e-32 HXXXD-type acyl-transferase family protein (.1) AT2G40230 118 / 5e-29 HXXXD-type acyl-transferase family protein (.1) AT5G57840 115 / 4e-28 HXXXD-type acyl-transferase family protein (.1) AT5G17540 103 / 1e-23 HXXXD-type acyl-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032554 [exp] 166 / 1e-46 AT5G41040 640 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Lus10043189 [exp] 166 / 2e-46 AT5G41040 635 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Lus10029920 [exp] 166 / 3e-46 AT1G65450 490 / 9e-172 HXXXD-type acyl-transferase family protein (.1.2.3) Lus10004481 [exp] 165 / 1e-44 AT1G65450 490 / 3e-169 HXXXD-type acyl-transferase family protein (.1.2.3) Lus10026123 [exp] 155 / 1e-42 AT5G48930 597 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Lus10012552 [exp] 154 / 5e-42 AT5G41040 642 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Lus10032020 [exp] 149 / 2e-39 AT5G41040 443 / 2e-151 HXXXD-type acyl-transferase family protein (.1.2) Lus10035189 [exp] 144 / 2e-38 AT5G41040 440 / 2e-152 HXXXD-type acyl-transferase family protein (.1.2) Lus10022163 [exp] 141 / 2e-37 AT5G48930 449 / 2e-156 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G244600 [exp] 501 / 6e-177 AT1G65450 205 / 5e-61 HXXXD-type acyl-transferase family protein (.1.2.3) Potri.010G180000 [exp] 197 / 6e-58 AT1G65450 565 / 0.0 HXXXD-type acyl-transferase family protein (.1.2.3) Potri.015G100800 [exp] 179 / 1e-51 AT5G41040 644 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Potri.001G326300 [exp] 172 / 1e-48 AT5G41040 677 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Potri.014G166600 [exp] 160 / 2e-44 AT5G41040 394 / 2e-134 HXXXD-type acyl-transferase family protein (.1.2) Potri.017G068500 [exp] 152 / 1e-41 AT5G41040 583 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Potri.003G183900 [exp] 152 / 1e-41 AT5G48930 758 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.001G042900 [exp] 150 / 7e-41 AT5G48930 749 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.018G105500 [exp] 147 / 2e-39 AT5G48930 556 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.018G104700 [exp] 139 / 1e-36 AT5G48930 489 / 5e-172 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF02458 [flax] [poplar] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Lus10038184 pacid=23158342 polypeptide=Lus10038184 locus=Lus10038184.g ID=Lus10038184.BGIv1.0 annot-version=v1.0 ATGGATGCGGTGAAGCTGATCGAGAAACGGATAATCAAGCCGGAGCAGGAAACAGAGCGCCGCCGCATATTCATGTCGAGACTGGACATAGCGCTGATTA GTTACCAAGAGAGCGCCCAGTTCTTCGACCCTCCGCCCAGCAACATCACCTTCTCCGATTCCTACGCCGCACTTTACAGAGCTCTCAGCCGCCTTCTTGT TCCTTACGACTTCTTCGCCGGAAGGCTGGCCCCTTCCCTGGAAGACAGTAGCCGTCTGGAGATCGATTGCAATGGCGGCGGTATCCTCGTTGCGGTTGCT CGAACGGAGACCAAATTGGCGGAATTGGGGGAGATTTTGGCGCGCAAACCTGATTACGACCCGCTGGTTGCTTTCTTGCACGAGGATAGACAGAACGAGG CTGATCTTCATGACAAGCCTCTTCTCCACATTCAGCTGACAGAATTTGGATGCGGAAGCCTGGCGTTAGCATCGAGCTACAACCACTGTGTCCTGGACGG CCTCTCCGTCCACAAATTCGAGATCAGTCTAGCCGCATTAACCCGAGACATTAACGCACCTCTCAAGCAACTCAACCCGGATCGCACCATCTTCAAAGCT AGAAACCCACCAAAGATCACCCACCCACATCACGAGTACTCCAAACCACCATCAGGACAAATCAGCGGTGCATCTCCTTTCAACACTTTCTACTCCGAAT ACAGAAACACGCATATGGTCTACATCTCCCGCAACCACATCTCCGCCCTGAAAAAGGCAGCTCTCAAGGACGGACTCTTGAAGAGCTGCACCTCCTTCCA GGCCGTCTCAGCCAGGCTATGGAAGGCCAGGACCGTTGCGCTCAAAATGAGCGATGACGCGATCAGCACGTTGCTGTTCCCTGTTGACGTCAGGAGGATT CTTCGTCCTCCTGTGCCGGCAGGGTTTGCTGGCAACGCAGTGGTGCCGGGTTTTGCTAGGGTGAGTGTGAAGGAGCTGAAGAAGGAAGGGAGTGATTCGT TGCTGGTGAGGCAAATTCAGGAAGGGCTTGAGAGGCTGGACGATGAGTATGTAAGGTCGTCGATCGATTGGCTTGAGGTTTATAGAGGGAGTCCGAATTG GGAGAACAGCTTTTCTGTGGCGCAGTGGTTTAGGTTGGCGCTTGATGAGGAGACTTATTCGTGGGGGACGGCTAGATGTGCTGTCCCGATCGGTGCGAAG CCTGGTTTGGTGGTTTTGCTGTCGGGGCCGAAAAGTGAGGGAGGGTTGAGTGTTTGCTTGGAGCTGCAAGATGATCAGCTGCTAGAGTTTAACAGAGTGT TGATGGAGTAA
AA sequence Show only first row Show all	>Lus10038184 pacid=23158342 polypeptide=Lus10038184 locus=Lus10038184.g ID=Lus10038184.BGIv1.0 annot-version=v1.0 MDAVKLIEKRIIKPEQETERRRIFMSRLDIALISYQESAQFFDPPPSNITFSDSYAALYRALSRLLVPYDFFAGRLAPSLEDSSRLEIDCNGGGILVAVA RTETKLAELGEILARKPDYDPLVAFLHEDRQNEADLHDKPLLHIQLTEFGCGSLALASSYNHCVLDGLSVHKFEISLAALTRDINAPLKQLNPDRTIFKA RNPPKITHPHHEYSKPPSGQISGASPFNTFYSEYRNTHMVYISRNHISALKKAALKDGLLKSCTSFQAVSARLWKARTVALKMSDDAISTLLFPVDVRRI LRPPVPAGFAGNAVVPGFARVSVKELKKEGSDSLLVRQIQEGLERLDDEYVRSSIDWLEVYRGSPNWENSFSVAQWFRLALDEETYSWGTARCAVPIGAK PGLVVLLSGPKSEGGLSVCLELQDDQLLEFNRVLME

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G65450			HXXXD-type acyl-transferase fa...		Lus10038184 [exp]	0	1
AT4G10265			Wound-responsive family protei...		Lus10004297 [exp]	9.5	0.6853
AT3G51490		TMT3	tonoplast monosaccharide trans...		Lus10010886 [exp]	52.6	0.5635
AT4G18450	AP2_ERF		Integrase-type DNA-binding sup...		Lus10005281 [exp]	53.4	0.5802
AT4G04750			Major facilitator superfamily ...		Lus10018957 [exp]	59.0	0.6356
					Lus10027487 [exp]	61.8	0.5972
AT1G62300	WRKY	ATWRKY6, WRKY6	WRKY family transcription fact...		Lus10021554 [exp]	86.5	0.6221
AT4G02250			Plant invertase/pectin methyle...		Lus10001464 [exp]	87.4	0.5960
AT3G49070			Protein of unknown function (D...		Lus10018879 [exp]	106.2	0.5789
					Lus10018846 [exp]	130.4	0.5700
AT5G66660			Protein of unknown function (D...		Lus10018880 [exp]	141.3	0.5859

Compare expression of checked genes

Lus10038184 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.