Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07170 213 / 1e-70 Sterile alpha motif (SAM) domain-containing protein (.1) AT5G48680 176 / 5e-56 Sterile alpha motif (SAM) domain-containing protein (.1) AT1G70180 72 / 7e-15 Sterile alpha motif (SAM) domain-containing protein (.1), Sterile alpha motif (SAM) domain-containing protein (.2) AT2G45700 46 / 7e-06 sterile alpha motif (SAM) domain-containing protein (.1) AT5G23680 42 / 0.0002 Sterile alpha motif (SAM) domain-containing protein (.1) AT3G48800 42 / 0.0002 Sterile alpha motif (SAM) domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022780 [exp] 269 / 2e-92 AT3G07170 219 / 5e-73 Sterile alpha motif (SAM) domain-containing protein (.1) Lus10025917 [exp] 247 / 1e-84 AT3G07170 157 / 3e-49 Sterile alpha motif (SAM) domain-containing protein (.1) Lus10011841 [exp] 248 / 4e-81 AT3G07170 196 / 9e-61 Sterile alpha motif (SAM) domain-containing protein (.1) Lus10014516 [exp] 77 / 2e-16 AT1G70180 80 / 1e-16 Sterile alpha motif (SAM) domain-containing protein (.1), Sterile alpha motif (SAM) domain-containing protein (.2) Lus10030825 [exp] 65 / 2e-12 AT1G70180 104 / 8e-25 Sterile alpha motif (SAM) domain-containing protein (.1), Sterile alpha motif (SAM) domain-containing protein (.2) Lus10030661 [exp] 62 / 2e-11 AT1G70180 102 / 6e-24 Sterile alpha motif (SAM) domain-containing protein (.1), Sterile alpha motif (SAM) domain-containing protein (.2) Lus10038078 [exp] 44 / 3e-05 AT2G45700 767 / 0.0 sterile alpha motif (SAM) domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G244700 [exp] 263 / 3e-90 AT3G07170 213 / 1e-70 Sterile alpha motif (SAM) domain-containing protein (.1) Potri.014G190800 [exp] 250 / 5e-85 AT3G07170 218 / 1e-72 Sterile alpha motif (SAM) domain-containing protein (.1) Potri.008G193300 [exp] 74 / 1e-15 AT1G70180 122 / 3e-31 Sterile alpha motif (SAM) domain-containing protein (.1), Sterile alpha motif (SAM) domain-containing protein (.2) Potri.010G036500 [exp] 71 / 1e-14 AT1G70180 134 / 1e-35 Sterile alpha motif (SAM) domain-containing protein (.1), Sterile alpha motif (SAM) domain-containing protein (.2) Potri.006G218300 [exp] 47 / 6e-06 AT2G45700 732 / 0.0 sterile alpha motif (SAM) domain-containing protein (.1) Potri.012G104700 [exp] 42 / 0.0002 AT3G48800 166 / 2e-49 Sterile alpha motif (SAM) domain-containing protein (.1) Potri.015G104000 [exp] 41 / 0.0003 AT3G48800 115 / 5e-30 Sterile alpha motif (SAM) domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0003 [flax] [poplar] SAM PF00536 [flax] [poplar] SAM_1 SAM domain (Sterile alpha motif)
Representative CDS sequence Show only first row Show all	>Lus10038185 pacid=23158402 polypeptide=Lus10038185 locus=Lus10038185.g ID=Lus10038185.BGIv1.0 annot-version=v1.0 ATGTATGCTGATAAAGTGGAAGCTTCGGGGAAAATGTCCGTGAAGGAGCGTCTCAATGGCAGTTCCGCCGCCGACTCTTCTCGCCGGAGACAAGTTACTA GAAAAAGGCAAAGGCAAGATGACAAGTGGGAGCATGATCTCTTTGATGATGATGAACCGCGTACTTCAAATCGCAGAATTGATGGTCAAGATCTTCGACT GAAGCTCCAGAAGAAAGTTCAAGCACCTCAAAGTGGGAGGGGAGGTGTGCGGGATTTGAGAGAGAAGCTATCTGGGACAGTGATTCCACAGCCGTTGAAT TCTGATCCACCAAAGTCGAAACAAGAGGCTGCTAAACCAGCTAGGAGAAATGTTGCTGTTGAAGCTCCTGAACCACAGATTAAGAAAGTTGCCGGTGTAG CCAGCAAAAAAAGGCCTCAGCAAAAGGCATCTTCTACTTCTGAGAATACATCAGTGGACAGCTTTTTGCAGTCATTAGGTCTTGAAAAGTACCTACTCAC TTTTCAAGCTGAGGAAGTTGATATGACCGTCCTTGTACACATGACCGATGATGATCTTAAAGCTTTGGGAGTTCCAATGGGTCCAAGAAAGAAGATAATT TTGGGATTGGAATCCAGAATCTAG
AA sequence Show only first row Show all	>Lus10038185 pacid=23158402 polypeptide=Lus10038185 locus=Lus10038185.g ID=Lus10038185.BGIv1.0 annot-version=v1.0 MYADKVEASGKMSVKERLNGSSAADSSRRRQVTRKRQRQDDKWEHDLFDDDEPRTSNRRIDGQDLRLKLQKKVQAPQSGRGGVRDLREKLSGTVIPQPLN SDPPKSKQEAAKPARRNVAVEAPEPQIKKVAGVASKKRPQQKASSTSENTSVDSFLQSLGLEKYLLTFQAEEVDMTVLVHMTDDDLKALGVPMGPRKKII LGLESRI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07170			Sterile alpha motif (SAM) doma...		Lus10038185 [exp]	0	1
AT1G54385			ARM repeat superfamily protein...		Lus10007428 [exp]	1.4	0.9121
AT5G55230		ATMAP65-1	microtubule-associated protein...		Lus10032567 [exp]	2.8	0.9082
AT4G34670			Ribosomal protein S3Ae (.1)		Lus10041191 [exp]	3.0	0.8946
AT1G60400			F-box/RNI-like superfamily pro...		Lus10009224 [exp]	4.5	0.8382
AT1G50000			methyltransferases (.1.2)		Lus10035666 [exp]	9.3	0.8137
AT3G55400		OVA1	OVULE ABORTION 1, methionyl-tR...		Lus10001704 [exp]	10.4	0.8300
AT3G02860	C2H2ZnF		zinc ion binding (.1.2)		Lus10037693 [exp]	13.2	0.8294
AT1G52980		AtNug2	nuclear/nucleolar GTPase 2, GT...		Lus10023835 [exp]	14.8	0.8506
AT5G46290		KAS1, KAS I, KA...	KETOACYL-ACP SYNTHASE 1, 3-ket...		Lus10040883 [exp]	16.6	0.8569
AT1G54385			ARM repeat superfamily protein...		Lus10010672 [exp]	19.0	0.8697

Compare expression of checked genes

Lus10038185 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.