Plant FIBer expression Database

Lus10038186 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G07180 683 / 0 GPI transamidase component PIG-S-related (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10025916
[exp]
1045 / 0 AT3G07180 736 / 0.0 GPI transamidase component PIG-S-related (.1.2.3)
Lus10022778
[exp]
390 / 1e-129 AT3G07180 357 / 2e-117 GPI transamidase component PIG-S-related (.1.2.3)
Lus10022779
[exp]
0 / 1 AT3G07180 105 / 9e-40 GPI transamidase component PIG-S-related (.1.2.3)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G245000
[exp]
719 / 0 AT3G07180 671 / 0.0 GPI transamidase component PIG-S-related (.1.2.3)
Potri.002G244801
[exp]
555 / 0 AT3G07180 526 / 0.0 GPI transamidase component PIG-S-related (.1.2.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF10510 PIG-S Phosphatidylinositol-glycan biosynthesis class S protein
Representative CDS sequence
>Lus10038186 pacid=23158167 polypeptide=Lus10038186 locus=Lus10038186.g ID=Lus10038186.BGIv1.0 annot-version=v1.0
ATGTCGGAGATTTCAGAGCTCCGTCCCATCAGAGAACCGACGCCGACGACATTGGGAGCTTCTGCAGAAGAAGCATCGCCAAGCCTATCGGAGTCGGATT
TCGACCCGAAAATCATGCGCAAGACGAAACCCGGACTGAAGCGGATTTTCCTCACCTTCTCTGTCCTTTTCTCCTTCCTCCTAGGCTTCCCCTTGTTATG
GAGAACTGTAGAAATCTACCGCTCGCCGCTTCCGTTCGACGACATGGACAAACTGTCGAAAGAAATCGAGTCGAGTCCAGTACAGTTCCCTTGTCATTTC
CAAGCAGTGTTCCTCAACTTCGAATCGCGTTCTAGTAGCAACAGTCTTGATCCGTTCGATCTAAGGAGTACGATCCTTGCAGGGATGACAAAATTGACCT
CCCAAGCTCAAGCCGGTCAATGTGGCTCTTGCGGTGGAAATTTCACTCTCTCCGTAACTGTAGACTCCGGTGACAGTGCTTGCAGACGATCGGATGAACA
AGGTAGTTTATGCTCATACAAATGTGGTAGAATAGGGGCTGTGAAATTTGATGATGAGGAGGGCGTGGATGAAGCTTTGAGGTCTGTACTGGATGAGAGT
TGTTCTGATTTCAGCGGGAAAGTGTATACCGTGGTGGTAGTGAATGGGAGTGGTGAAGAACCCAGGGCTTTGGTGGGGAAGTACCGTCATGGGTGGATTG
TGGGAAAGAAATTAGAAGCTGAGGCGGTGATGAAGTACCGTCATGAGTGGATTGTGGGAAAGAAATTAGAGGCTGAGGCGGTGATGGGGAGAGTGGCTGA
AATGTTCGTAGGGGTCTTTATGAATGGAGGGAGAGATGAGGGAGCTATTCAAGGGGAATTCATGCCAGTTGGTGCTGATGGCAGAGTTGTTCTCTCATTT
AATTTGCTCAATGCAAATCCGGATGATTGGGTTTATGATTGGGACTTCCAGGGAATCGATGCAACTCTCTTGAGTCCAGTGATCGAAGCATTAAAACCTA
TAGCAAACATAACCGTGGAAAGCCAAGTCTTGTACCACACTCCAAAGTCTTCATTATCGTACTGGGATGAGAGTTTGCAGAGCTATATCTTCAGCACGGG
AGACCTCCCTTTCTTTGTGAACTCAAATGAATGGCACTTAGATACATCTGTTGCAGCTGGTGGGCGCTCGAAGATATTGCAATTTGTGGTATATGTGCCA
TCTGCAAAGGAATACCCTCTTTTCCTACAACTTCCAAATGGAGATATTTCTAGGACAAATGGCTTCATATCTCCGATGTGGGGAGGCATTATGGTCTGGA
ATCCCCAACGCAGCCTAAAGGATTCCACAAACAAGCCTCCAGCTATACGATTAATGTCTCCTGCTGATCTTCAAGAGATATTTGGAGTTCTCCTGGGGCA
ACTGCGACAACTGTTTGGCCTAAAATCTGACGGCATTTACATTGGTGCATCAGGTTCCTGCAAGCTCTTAGCTAGTGGAAAGGGCTTTACAGAATGGCAA
GAAAACTTTTATGCTCACTGTCTGATTAAGTTATCTCAGGAGTTGGATGTCTTGTCACGGCAGCACACATGCTTTAATCTTCATTCAAGCGGCATGACTC
TTGGATCTCTTTCCAGACTGGTTGAATCACTGCCGAGGATGATCATAAAGGACGAGATAGGAAAGCAGGTAAAGTTTTCTCTTGAAGCAGCCAAATTAGC
TCAGAGCAATGCGTCTGATGGACTTTGCGAGGCTTCGGCTGTGTCATCGCGGCAAGCCAGGGCATTAGCAGAAGATGCCTTCTTCCACCCGTCTATTATG
TCCGTCAGCTACTTCTCCTTTGAGCATTGCTTTGCCGTCTATTCGCCCTTCTTCCTGCCAGTGTCGTTGCATGTCCTCCTTGCTGCACTAAGAGAATGGA
GAAGATACAAGCAAGAAAAGTCGAAGTACTTGCTTTGGAAGGCTAAGGTAAAGGACGCTTAA
AA sequence
>Lus10038186 pacid=23158167 polypeptide=Lus10038186 locus=Lus10038186.g ID=Lus10038186.BGIv1.0 annot-version=v1.0
MSEISELRPIREPTPTTLGASAEEASPSLSESDFDPKIMRKTKPGLKRIFLTFSVLFSFLLGFPLLWRTVEIYRSPLPFDDMDKLSKEIESSPVQFPCHF
QAVFLNFESRSSSNSLDPFDLRSTILAGMTKLTSQAQAGQCGSCGGNFTLSVTVDSGDSACRRSDEQGSLCSYKCGRIGAVKFDDEEGVDEALRSVLDES
CSDFSGKVYTVVVVNGSGEEPRALVGKYRHGWIVGKKLEAEAVMKYRHEWIVGKKLEAEAVMGRVAEMFVGVFMNGGRDEGAIQGEFMPVGADGRVVLSF
NLLNANPDDWVYDWDFQGIDATLLSPVIEALKPIANITVESQVLYHTPKSSLSYWDESLQSYIFSTGDLPFFVNSNEWHLDTSVAAGGRSKILQFVVYVP
SAKEYPLFLQLPNGDISRTNGFISPMWGGIMVWNPQRSLKDSTNKPPAIRLMSPADLQEIFGVLLGQLRQLFGLKSDGIYIGASGSCKLLASGKGFTEWQ
ENFYAHCLIKLSQELDVLSRQHTCFNLHSSGMTLGSLSRLVESLPRMIIKDEIGKQVKFSLEAAKLAQSNASDGLCEASAVSSRQARALAEDAFFHPSIM
SVSYFSFEHCFAVYSPFFLPVSLHVLLAALREWRRYKQEKSKYLLWKAKVKDA

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G07180 GPI transamidase component PIG... Lus10038186
[exp]
0 1
AT1G09020 ATSNF4, SNF4 homolog of yeast sucrose nonfe... Lus10037503
[exp]
6.9 0.8219
AT1G09020 ATSNF4, SNF4 homolog of yeast sucrose nonfe... Lus10006516
[exp]
7.9 0.8058
AT3G15150 HPY2, ATMMS21 HIGH PLOIDY2, A. THALIANA METH... Lus10015968
[exp]
16.9 0.8311
AT5G50840 unknown protein Lus10040383
[exp]
18.9 0.8161
AT5G51230 C2H2ZnF AtEMF2, CYR1, V... CYTOKININ RESISTANT 1, EMBRYON... Lus10042997
[exp]
20.9 0.8115
AT3G50670 U1SNRNP, U1-70K U1 small nuclear ribonucleopro... Lus10026026
[exp]
28.6 0.7936
AT1G70150 zinc ion binding (.1) Lus10010722
[exp]
35.0 0.7647
AT1G61470 Polynucleotidyl transferase, r... Lus10007771
[exp]
38.4 0.7582
AT1G45150 unknown protein Lus10002387
[exp]
44.0 0.7952
AT5G62950 RNA polymerase II, Rpb4, core ... Lus10039583
[exp]
46.5 0.7882

Lus10038186 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.