Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G25060 595 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G12770 386 / 2e-126 MEF22 mitochondrial editing factor 22 (.1) AT2G13600 347 / 4e-111 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G11290 345 / 2e-109 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G39350 337 / 8e-108 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G29760 336 / 1e-106 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G33990 330 / 2e-103 EMB2758 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G49142 325 / 5e-103 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G18750 327 / 1e-101 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G16860 326 / 1e-101 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025915 [exp] 1054 / 0 AT3G25060 627 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10024876 [exp] 374 / 7e-120 AT3G12770 886 / 0.0 mitochondrial editing factor 22 (.1) Lus10000706 [exp] 369 / 2e-118 AT3G12770 878 / 0.0 mitochondrial editing factor 22 (.1) Lus10017446 [exp] 369 / 3e-118 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10029436 [exp] 350 / 2e-112 AT3G08820 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10031989 [exp] 348 / 2e-111 AT3G26782 865 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014707 [exp] 347 / 7e-109 AT3G63370 893 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10028593 [exp] 338 / 5e-108 AT5G16860 879 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018492 [exp] 335 / 1e-107 AT4G18750 385 / 2e-123 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G245200 [exp] 748 / 0 AT3G25060 683 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G152000 [exp] 381 / 9e-124 AT3G12770 931 / 0.0 mitochondrial editing factor 22 (.1) Potri.003G191000 [exp] 368 / 5e-118 AT1G11290 1178 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G044700 [exp] 356 / 2e-113 AT3G22690 582 / 0.0 unknown protein Potri.009G044700 [exp] 348 / 3e-111 AT2G29760 1013 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G466066 [exp] 349 / 9e-111 AT4G33990 1067 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G019500 [exp] 341 / 3e-109 AT2G22410 791 / 0.0 SLOW GROWTH 1 (.1) Potri.004G059400 [exp] 343 / 6e-108 AT4G18750 1110 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G322100 [exp] 333 / 3e-106 AT3G26782 897 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G128900 [exp] 333 / 4e-106 AT3G08820 812 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10038187 pacid=23158449 polypeptide=Lus10038187 locus=Lus10038187.g ID=Lus10038187.BGIv1.0 annot-version=v1.0 ATGGTCACCTCCGGTCTCTACGCTAATGGAAACTACGTGGATTGCTTAATCTCTTCCTATTCACGGGATGGCGGAATTGCAACTGCCCGCCAAGTGTTCG ACAAATTGCCTAAGAGAGGTATCAAGGCGTGGAACTCGATCATTATTGCATACTCTCGAGACTGTTTCCCCAATCAAGTTCTGGGTCTTTACCGTAGAAT GATGGCTGAGGGAGTCAGACCTGACAGCTCCACTTTTACTTTGGCACTCAAAGCTTGTTCGAGCGTGACGGACTTAGAAGTGGGAAAAGACGTTTGGCGA CAAGCAGTGGCTTTCGGGTACCGAGGTGATGTGTTTGTTGCGTCGTCTGTTTTAAATTTGTTTGCAAAGTGTGGGAGAATGGATGAAGCAAAGAAAGTGT TTGATACGATGGTGAAAAGAGATGTTGTCAGTTGGACAACTATGGTGACTGGGTTTATTAGGAGTGGACAGCCATTAGAGGCAGTGGATATGTACAGAAC GATGCAAAAGGAGGGGATTGAAGGAGATGGGGTTGTAATGGTTGGTTTGATTAAGGCTTGCTCTGATCTTGGAGAAACTAAGGTGGGTCTGTCAGTTCAT GGATACATTGTTAGGAGAGAGATTCATATGAATGATGTTGTTGTTCAAACCAGCCTTGTAGATTTGTATGTTAAAAATGGAGATTTGGAGCTTGCTTCTC GTGTTTTCAGACAGATGCGGTTCCAAAATGCTGCTTCTTGGGGTGCACTAATCTCTGGTTATGCTCAAAATGGTTTTGCAGGAAACGCACTTGAATCTTT CGTCGATATGCAGAGTCGAGGGGTAAAGCCGGATTCGGTTTCTCTCGTTAGTGCAGTTTTGGCTTGTTCACAAGTAGGACATTTGAAGCTAGGCAAGTCC ATACACGGGTATGTCCTTAGAAGGCTTGACCTGGAACAGAATTTAGTCACTGCTTTCATAGACTTGTATGCAAAATGTGGATCACTTGTTAGTGCTCGAG TGTTGTTTGATCAGGCGATTGCAAGAGATGTGATAATGTGGAATGCCATGATTTCCAGCTACGGTATCCATGGTCGTGGCAATGAAGCCCTCTCATTATT TCTAGAGATGACAGGAACAGACGCGAAACCAGATCATACAACTTTTGCTTCACTTCTTTCAGCTTTGAGTCACTCAGGATTAGTGGAAGCAGGCCAATAT TGGTTCCATAAAATGGTCTATGAATTTAAGATTCAGGCTAGTGAGAAGCATCTTGTGTGCATGGTCGATCTGTTATCCCGAGCAGGACGAGTAGAAGAAG CCTATCAGCTCATCGAGTCGATGGATTCTGAACCGGGACTTGCTGTTTGGGTAGCCCTTTTGTCAGGCTGCCATAATTATAAGAACATTTTAATTGGAGA AGAAGCAGCAAAGAAGATACTTGCGTCAAACGCAAACGACTCTGGAACTTACTCATTAGTTTCAAACTTCTTTTCCATGACGAAGAAGTGGGATGAAGTC TCTGGTTCAAGGAGGATGATGAAAAAGACAGGGTTGAGGAAAGTACCTGGTTTTAGTGCAGTGGAAGTGAATGGCAAACATCAAGCTTTTCTGATGGAAG ACAGAAACCACCATCAGTACGAAGATATCATACAAATACTGGATAATTTGGCTCATGAGATGACTTCCATCAGATCTACTCAGAAGGTGGAATGA
AA sequence Show only first row Show all	>Lus10038187 pacid=23158449 polypeptide=Lus10038187 locus=Lus10038187.g ID=Lus10038187.BGIv1.0 annot-version=v1.0 MVTSGLYANGNYVDCLISSYSRDGGIATARQVFDKLPKRGIKAWNSIIIAYSRDCFPNQVLGLYRRMMAEGVRPDSSTFTLALKACSSVTDLEVGKDVWR QAVAFGYRGDVFVASSVLNLFAKCGRMDEAKKVFDTMVKRDVVSWTTMVTGFIRSGQPLEAVDMYRTMQKEGIEGDGVVMVGLIKACSDLGETKVGLSVH GYIVRREIHMNDVVVQTSLVDLYVKNGDLELASRVFRQMRFQNAASWGALISGYAQNGFAGNALESFVDMQSRGVKPDSVSLVSAVLACSQVGHLKLGKS IHGYVLRRLDLEQNLVTAFIDLYAKCGSLVSARVLFDQAIARDVIMWNAMISSYGIHGRGNEALSLFLEMTGTDAKPDHTTFASLLSALSHSGLVEAGQY WFHKMVYEFKIQASEKHLVCMVDLLSRAGRVEEAYQLIESMDSEPGLAVWVALLSGCHNYKNILIGEEAAKKILASNANDSGTYSLVSNFFSMTKKWDEV SGSRRMMKKTGLRKVPGFSAVEVNGKHQAFLMEDRNHHQYEDIIQILDNLAHEMTSIRSTQKVE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G25060			Tetratricopeptide repeat (TPR)...		Lus10038187 [exp]	0	1
AT3G25060			Tetratricopeptide repeat (TPR)...		Lus10025915 [exp]	1.7	0.8405
					Lus10043057 [exp]	5.7	0.8342
AT3G05400			Major facilitator superfamily ...		Lus10029970 [exp]	9.2	0.8249
AT5G13700		ATPAO1, APAO	polyamine oxidase 1 (.1)		Lus10041898 [exp]	9.2	0.8276
AT3G11591			unknown protein		Lus10016986 [exp]	9.8	0.8243
AT2G27790			RNA-binding (RRM/RBD/RNP motif...		Lus10030600 [exp]	14.2	0.8398
AT2G02570			nucleic acid binding;RNA bindi...		Lus10024458 [exp]	17.1	0.8273
AT2G04865			Aminotransferase-like, plant m...		Lus10006393 [exp]	19.3	0.8153
AT5G37590			Tetratricopeptide repeat (TPR)...		Lus10020809 [exp]	19.5	0.8331
AT1G27695			glycine-rich protein (.1.2)		Lus10032855 [exp]	23.3	0.8111

Compare expression of checked genes

Lus10038187 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.