Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48660 231 / 6e-77 B-cell receptor-associated protein 31-like (.1) AT3G07190 223 / 7e-74 B-cell receptor-associated protein 31-like (.1) AT5G42570 133 / 7e-39 B-cell receptor-associated 31-like (.1) AT1G11905 105 / 5e-28 B-cell receptor-associated protein 31-like (.1.2) AT3G20450 82 / 1e-19 B-cell receptor-associated protein 31-like (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011842 [exp] 290 / 3e-100 AT5G48660 270 / 1e-92 B-cell receptor-associated protein 31-like (.1) Lus10022777 [exp] 266 / 6e-91 AT5G48660 271 / 9e-93 B-cell receptor-associated protein 31-like (.1) Lus10031546 [exp] 124 / 6e-35 AT5G42570 287 / 3e-99 B-cell receptor-associated 31-like (.1) Lus10030043 [exp] 120 / 5e-34 AT5G42570 241 / 1e-81 B-cell receptor-associated 31-like (.1) Lus10020025 [exp] 108 / 4e-29 AT1G11905 225 / 9e-75 B-cell receptor-associated protein 31-like (.1.2) Lus10035283 [exp] 107 / 5e-29 AT5G42570 244 / 9e-83 B-cell receptor-associated 31-like (.1) Lus10015132 [exp] 107 / 1e-28 AT5G42570 258 / 7e-88 B-cell receptor-associated 31-like (.1) Lus10025914 [exp] 44 / 3e-06 AT3G07190 66 / 7e-15 B-cell receptor-associated protein 31-like (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G191500 [exp] 261 / 9e-89 AT5G48660 237 / 2e-79 B-cell receptor-associated protein 31-like (.1) Potri.002G245300 [exp] 254 / 2e-86 AT3G07190 239 / 3e-80 B-cell receptor-associated protein 31-like (.1) Potri.004G007900 [exp] 128 / 8e-37 AT5G42570 259 / 3e-88 B-cell receptor-associated 31-like (.1) Potri.011G007200 [exp] 128 / 1e-36 AT5G42570 278 / 1e-95 B-cell receptor-associated 31-like (.1) Potri.011G089100 [exp] 100 / 4e-27 AT5G42570 140 / 5e-43 B-cell receptor-associated 31-like (.1) Potri.014G154800 [exp] 94 / 2e-23 AT5G42570 152 / 2e-46 B-cell receptor-associated 31-like (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05266 [flax] [poplar] DUF724 Protein of unknown function (DUF724) PF05529 [flax] [poplar] Bap31 Bap31/Bap29 transmembrane region
Representative CDS sequence Show only first row Show all	>Lus10038188 pacid=23158380 polypeptide=Lus10038188 locus=Lus10038188.g ID=Lus10038188.BGIv1.0 annot-version=v1.0 ATGATGCAGCTGCTGTTCTTGGTTCTGTTCGCGGAAGTGGGCATAGCAATCTTGCTGCTGGTGAAGATTGGTCCACTGAGGGAGCTTGTAATGAAGAGTT TGGATCAAGTGAAGATGGGGAAAGGTCCAGCCAGTGTGAAAACAATTGCTGGTACTATGTTTGTGATCCTCTTGTCTTACCTAATGAGCATTGTTAAGAT CCAAAGCAAAGGCGCCAAGCTCGGCACTTTGTCCCCTATGGACCAAGTTCTCTGGAGAAGCCACTTGCTCGACGCTTCCCTCATCGGGTTTACATTGTTT CTTGGGTTCGTAATCGACCGAATGCACCACTATCTGAAAAAGCTTATTGGTCTAAAGGGCAGAACGGGAGCAGTAAGAGAGGAATTTGAGAAGCTTCAGA AGGAGAATGCTCAGCTTAAAGAGAAAGAAGAGAAAGCTTCCAAGGAAATGAATCAGCTTCAGGAGAAAATATCAGCACTGTCAGAAGATGTGAAGAAGCT GAAGTTGGAAACAGAAGAAAAGGATAAGAAAGTTGAAACTGCAGAAGCACATGTTACAGCCCTCCAAAAGCAATCTGCAGATCTGTTGCTTGAGTATGAC CGGTTGCTTGAAGACAACCAAAACCTACAGACTCAACAAGCACTAGGATACAAGCGTTGA
AA sequence Show only first row Show all	>Lus10038188 pacid=23158380 polypeptide=Lus10038188 locus=Lus10038188.g ID=Lus10038188.BGIv1.0 annot-version=v1.0 MMQLLFLVLFAEVGIAILLLVKIGPLRELVMKSLDQVKMGKGPASVKTIAGTMFVILLSYLMSIVKIQSKGAKLGTLSPMDQVLWRSHLLDASLIGFTLF LGFVIDRMHHYLKKLIGLKGRTGAVREEFEKLQKENAQLKEKEEKASKEMNQLQEKISALSEDVKKLKLETEEKDKKVETAEAHVTALQKQSADLLLEYD RLLEDNQNLQTQQALGYKR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07190			B-cell receptor-associated pro...		Lus10038188 [exp]	0	1
AT1G06780		GAUT6	galacturonosyltransferase 6 (....		Lus10018773 [exp]	1.0	0.8909
AT3G48750		CDKA1, CDC2A, C...	cell division control 2 (.1)		Lus10038754 [exp]	2.0	0.8881
AT5G24580			Heavy metal transport/detoxifi...		Lus10015583 [exp]	3.2	0.8483
AT1G71360			Galactose-binding protein (.1)		Lus10002929 [exp]	4.0	0.8511
AT1G64760			O-Glycosyl hydrolases family 1...		Lus10020261 [exp]	6.5	0.8333
AT1G21870		GONST5	golgi nucleotide sugar transpo...		Lus10025645 [exp]	6.5	0.8529
AT1G30910			Molybdenum cofactor sulfurase ...		Lus10007754 [exp]	7.5	0.8300
AT4G08900		ARGAH1	arginine amidohydrolase 1, arg...		Lus10030288 [exp]	8.1	0.7860
AT4G14010		RALFL32	ralf-like 32 (.1)		Lus10023223 [exp]	8.4	0.8238
AT3G60030	SBP	SPL12	squamosa promoter-binding prot...		Lus10004523 [exp]	9.8	0.8468

Compare expression of checked genes

Lus10038188 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.