Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01580 81 / 1e-18 B3 AP2/B3-like transcriptional factor family protein (.1) AT3G18960 79 / 1e-17 B3 AP2/B3-like transcriptional factor family protein (.1) AT3G18990 76 / 8e-16 B3 REM39, VRN1 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) AT1G49475 73 / 2e-15 B3 AP2/B3-like transcriptional factor family protein (.1) AT4G33280 64 / 2e-11 B3 REM16 AP2/B3-like transcriptional factor family protein (.1) AT4G31650 59 / 6e-10 B3 REM6 Transcriptional factor B3 family protein (.1) AT3G06220 53 / 2e-08 B3 REM21 AP2/B3-like transcriptional factor family protein (.1) AT5G18090 52 / 7e-08 B3 AP2/B3-like transcriptional factor family protein (.1) AT4G31640 52 / 2e-07 B3 REM5 transcriptional factor B3 family protein (.1) AT4G00260 51 / 3e-07 B3 MEE45 maternal effect embryo arrest 45, Transcriptional factor B3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025913 [exp] 437 / 4e-157 AT3G18990 81 / 2e-18 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10039303 [exp] 106 / 6e-26 AT3G18990 76 / 1e-14 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10041961 [exp] 100 / 8e-25 AT3G18990 94 / 3e-22 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10016777 [exp] 99 / 7e-24 AT3G18990 115 / 3e-29 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10017970 [exp] 97 / 1e-23 AT3G18990 90 / 1e-20 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10025507 [exp] 97 / 2e-23 AT3G18990 91 / 1e-21 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10027543 [exp] 98 / 6e-23 AT3G18990 63 / 2e-11 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10023079 [exp] 91 / 1e-21 AT3G18990 69 / 3e-13 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10014359 [exp] 91 / 2e-21 AT3G18990 79 / 1e-16 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G230100 [exp] 90 / 3e-20 AT3G18990 161 / 1e-44 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.014G057101 [exp] 79 / 2e-17 AT3G18990 76 / 5e-16 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.007G035700 [exp] 72 / 3e-15 AT4G01580 71 / 4e-15 AP2/B3-like transcriptional factor family protein (.1) Potri.010G191500 [exp] 72 / 2e-14 AT3G18990 189 / 5e-57 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G147200 [exp] 71 / 4e-14 AT1G49480 110 / 5e-28 related to vernalization1 1 (.1) Potri.009G108500 [exp] 68 / 7e-13 AT3G18990 395 / 2e-137 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G147000 [exp] 65 / 8e-12 AT3G18990 258 / 3e-83 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G146900 [exp] 58 / 2e-09 AT3G18990 353 / 6e-121 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.002G129900 [exp] 50 / 5e-07 AT4G33280 237 / 9e-76 AP2/B3-like transcriptional factor family protein (.1) Potri.002G129800 [exp] 48 / 3e-06 AT4G33280 159 / 9e-45 AP2/B3-like transcriptional factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0405 [flax] [poplar] DNA_b-psBarrel PF02362 [flax] [poplar] B3 B3 DNA binding domain
Representative CDS sequence Show only first row Show all	>Lus10038189 pacid=23158379 polypeptide=Lus10038189 locus=Lus10038189.g ID=Lus10038189.BGIv1.0 annot-version=v1.0 ATGGATTCTCCCTGGGGCGGACCACGGTTCTTCAAAATACTTCTCCAGCACAACATTGAAGCCAACTACATGCTGATTCCTAAGAAATTTGCAAAGGAGC ATTGTCGTGATCTCTCAAACCAGATCATACTTAAGGTTCCGAACGGTGAGGCTTGGCCGGTGGAGTTGGTGAGAGATGAATTAGCTAAAGGAGGACTCGT TTGGTTTGGCAAAGGGTGGCAAAAGTTCTCAGAACGTTACTGTTTCCGACATGGCCATTTCCTGCTCTTTGAGCTTCTCCACAACTCTTCCTTCTTGGTC CTCATATTTAATCGCACCGCTGCAGAGATCGGCTACTCGAAACAGGATTGGGAACTCGCTCAGACTGAGACAATGCTGGAAAGTAGTGATGCTGCAACAG ATGTTGCAGGCAAAGATGAAAACTTGGCAAGTACAAAGAAGACCCCAGTTGTTGTTTCTAAGAAGCTTACATCCCAAAGGGCTTCCAAATCATCTGCCGC CATTGTTAATGTTCTGCCGTCTTTCAAGAAACCTGCGGTGCCAAAGAAATTCGTGGAAATGTATGTTACGACATCAAGTGAGAAGATGGTGGAGCTTAAA TTTGATGGTGAAACTTGGCCAGTGAAGCTGAAGATCTATCAACAAGCCAGTTACTGTCAACTGTCAGAAGGTTGGGTCCAGTTTGCTAGGGACAACAATC TGAAAGCAGGGGACACTTGCACCTTTGAACTCGCTAGTGCAACCAGTTTCAATGTCCACATCTATAGGTGTTAA
AA sequence Show only first row Show all	>Lus10038189 pacid=23158379 polypeptide=Lus10038189 locus=Lus10038189.g ID=Lus10038189.BGIv1.0 annot-version=v1.0 MDSPWGGPRFFKILLQHNIEANYMLIPKKFAKEHCRDLSNQIILKVPNGEAWPVELVRDELAKGGLVWFGKGWQKFSERYCFRHGHFLLFELLHNSSFLV LIFNRTAAEIGYSKQDWELAQTETMLESSDAATDVAGKDENLASTKKTPVVVSKKLTSQRASKSSAAIVNVLPSFKKPAVPKKFVEMYVTTSSEKMVELK FDGETWPVKLKIYQQASYCQLSEGWVQFARDNNLKAGDTCTFELASATSFNVHIYRC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10038189 [exp]	0	1
AT5G52600	MYB	AtMYB82	myb domain protein 82 (.1)		Lus10038092 [exp]	5.7	0.9005
AT4G37750	AP2_ERF	DRG, CKC1, ANT	DRAGON, COMPLEMENTING A PROTEI...		Lus10007719 [exp]	6.9	0.8814
AT4G00820		IQD17	IQ-domain 17 (.1)		Lus10023233 [exp]	9.2	0.8799
AT2G39870			unknown protein		Lus10040247 [exp]	12.6	0.8705
AT4G37750	AP2_ERF	DRG, CKC1, ANT	DRAGON, COMPLEMENTING A PROTEI...		Lus10018655 [exp]	14.1	0.8761
AT3G48970			Heavy metal transport/detoxifi...		Lus10027470 [exp]	18.2	0.8464
AT3G57070			Glutaredoxin family protein (....		Lus10042021 [exp]	18.7	0.8509
AT2G38370			Plant protein of unknown funct...		Lus10025249 [exp]	23.8	0.8623
AT2G27990	HD	PNF, BLH8	POUND-FOOLISH, BEL1-like homeo...		Lus10021452 [exp]	25.3	0.8565
AT3G53190			Pectin lyase-like superfamily ...		Lus10023917 [exp]	26.2	0.8514

Compare expression of checked genes

Lus10038189 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.